Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g0961 | ATGTACCCACAGCAACAGCACCATGTTCCCTTCACCAACGTTCATCAACCCTACTGTTCTGCCAACCCCTTCTTGTTGTCTTTCCCTCTCAATTCCGATTCTGCTCATCATCCTCCAGCCACCGACCCACTTGCAAATTCAACCCCTTCTTCTGTTGCTGCACCTTACTCTTCCCAATCCTTTGATTCTCACAACTGGATCGTCAAACAAGCTGACCCCGTCACATTTGATCATGCTGTTGGTCCATCGCATGAAACTTCGGCAGCATCTGCAAGTTTTCCTATCACATGGAATGGCACATGGTCCCATCAAATTTTCACTAATGATGCTACGGTAGTGTCACCTAACCAAATCAGACTCAGCAAACCAATTAGATGTGAAGTTTGCAAAATTGATTGTAATAGCAAAGATGTTTATGAAAAACACATATTGGGAAAGAAACACAAAAGGAATTTGCAGGTGCAGACTAATCCTCCAAATTCATCATTAGCAGGACCCTCTTATGCAAGTGTACCAAGTCAAACAAATAGTATCCAAGGAAAAGTGTCTGATGGTGCTGCAGGCAAGGAGTTAAAGTCTAAGGAACAAAAGCTTTCAAATGGTGGTTCAACCACTGATTCTGCCAAAGTTTGCACAGTATGCAACATTGTGTGCACTAGTCAAGACGTATATAACAAACATCTAGCTGGGAAAAAGCATACTGCTCAGGTAGGCTTGATGTTAAATAATGGGATTGGTCCATACATTGCTGCATTTAAGCATCAAGGCATTGGTCCTTGGAAGAAATCTCCAAAGAAAATCAAGGTTGATCAATCTGCATGGTGTGACGTATGTAAGATTAAATGTAATAGCAGGGACGTGTATATTGTACACTTATGCGGGAAGAAACACATGAAGAACTTGGAGAAACTGTCAAAACCAAAAATTGATGCTGGTGATGTTACTGCTGTTGTGAATGCTTTACAAGAAACAGCAAAGCCGATAATTGGGCCGCAGGAAAAGCCAGGTACAGATAAACCAAAATCACAGAAGGCACCAGAAATGGATATTGAGACAAAGAAGCGTAAAGTGGTAGAAGGTGGGGCTGCAGAAGCTTCTGTTAGAATTTGCACCCTATGCAATGTGGTGTGCAACAGCCAGACAGTTTTTGATACTCACCTCGTTGGGCATAAACACGCTGCAATGGCGAAGAAGCAGGGAGAGTCAACAGGGGAAACTACTTGCTGA | 1227 | 0.4271 | MYPQQQHHVPFTNVHQPYCSANPFLLSFPLNSDSAHHPPATDPLANSTPSSVAAPYSSQSFDSHNWIVKQADPVTFDHAVGPSHETSAASASFPITWNGTWSHQIFTNDATVVSPNQIRLSKPIRCEVCKIDCNSKDVYEKHILGKKHKRNLQVQTNPPNSSLAGPSYASVPSQTNSIQGKVSDGAAGKELKSKEQKLSNGGSTTDSAKVCTVCNIVCTSQDVYNKHLAGKKHTAQVGLMLNNGIGPYIAAFKHQGIGPWKKSPKKIKVDQSAWCDVCKIKCNSRDVYIVHLCGKKHMKNLEKLSKPKIDAGDVTAVVNALQETAKPIIGPQEKPGTDKPKSQKAPEMDIETKKRKVVEGGAAEASVRICTLCNVVCNSQTVFDTHLVGHKHAAMAKKQGESTGETTC* | 409 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g0961 | 408 | SMART | ZnF_U1_5 | 121 | 155 | IPR003604 | GO:0003676|GO:0008270 | |
Apr1g0961 | 408 | SMART | ZnF_U1_5 | 270 | 304 | IPR003604 | GO:0003676|GO:0008270 | |
Apr1g0961 | 408 | SMART | ZnF_U1_5 | 206 | 240 | IPR003604 | GO:0003676|GO:0008270 | |
Apr1g0961 | 408 | SMART | ZnF_U1_5 | 365 | 399 | IPR003604 | GO:0003676|GO:0008270 | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 149 | 205 | - | - | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 150 | 182 | - | - | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 328 | 351 | - | - | |
Apr1g0961 | 408 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 14 | 235 | - | - | |
Apr1g0961 | 408 | PANTHER | ZINC FINGER RNA-BINDING PROTEIN | 251 | 401 | - | - | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 41 | 56 | - | - | |
Apr1g0961 | 408 | PANTHER | - | 251 | 401 | - | - | |
Apr1g0961 | 408 | PANTHER | - | 14 | 235 | - | - | |
Apr1g0961 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 365 | 398 | IPR036236 | - | |
Apr1g0961 | 408 | Pfam | Zinc-finger of C2H2 type | 370 | 392 | - | - | |
Apr1g0961 | 408 | Pfam | Zinc-finger of C2H2 type | 125 | 148 | - | - | |
Apr1g0961 | 408 | Pfam | Zinc-finger of C2H2 type | 274 | 297 | - | - | |
Apr1g0961 | 408 | Pfam | Zinc-finger of C2H2 type | 210 | 233 | - | - | |
Apr1g0961 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 104 | 154 | IPR036236 | - | |
Apr1g0961 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 269 | 304 | IPR036236 | - | |
Apr1g0961 | 408 | Gene3D | Classic Zinc Finger | 110 | 155 | - | - | |
Apr1g0961 | 408 | Gene3D | Classic Zinc Finger | 186 | 239 | - | - | |
Apr1g0961 | 408 | Gene3D | Classic Zinc Finger | 259 | 304 | - | - | |
Apr1g0961 | 408 | Gene3D | Classic Zinc Finger | 344 | 400 | - | - | |
Apr1g0961 | 408 | SUPERFAMILY | beta-beta-alpha zinc fingers | 203 | 237 | IPR036236 | - | |
Apr1g0961 | 408 | SMART | c2h2final6 | 273 | 297 | IPR013087 | - | |
Apr1g0961 | 408 | SMART | c2h2final6 | 124 | 148 | IPR013087 | - | |
Apr1g0961 | 408 | SMART | c2h2final6 | 368 | 390 | IPR013087 | - | |
Apr1g0961 | 408 | SMART | c2h2final6 | 209 | 233 | IPR013087 | - | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 337 | 351 | - | - | |
Apr1g0961 | 408 | MobiDBLite | consensus disorder prediction | 36 | 56 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g0961 | Apr-Chr1 | 14185572 | 14189718 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g0961 | 180 | 395 | C2H2 Transcription Factor Family | AT5G61190 | 26.840 | 4.74e-18 | 84.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Apr1g0961 | zf-met | 1.5e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g0961 | - | - | aprc:113848135 | 848.58 |