Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0961 ATGTACCCACAGCAACAGCACCATGTTCCCTTCACCAACGTTCATCAACCCTACTGTTCTGCCAACCCCTTCTTGTTGTCTTTCCCTCTCAATTCCGATTCTGCTCATCATCCTCCAGCCACCGACCCACTTGCAAATTCAACCCCTTCTTCTGTTGCTGCACCTTACTCTTCCCAATCCTTTGATTCTCACAACTGGATCGTCAAACAAGCTGACCCCGTCACATTTGATCATGCTGTTGGTCCATCGCATGAAACTTCGGCAGCATCTGCAAGTTTTCCTATCACATGGAATGGCACATGGTCCCATCAAATTTTCACTAATGATGCTACGGTAGTGTCACCTAACCAAATCAGACTCAGCAAACCAATTAGATGTGAAGTTTGCAAAATTGATTGTAATAGCAAAGATGTTTATGAAAAACACATATTGGGAAAGAAACACAAAAGGAATTTGCAGGTGCAGACTAATCCTCCAAATTCATCATTAGCAGGACCCTCTTATGCAAGTGTACCAAGTCAAACAAATAGTATCCAAGGAAAAGTGTCTGATGGTGCTGCAGGCAAGGAGTTAAAGTCTAAGGAACAAAAGCTTTCAAATGGTGGTTCAACCACTGATTCTGCCAAAGTTTGCACAGTATGCAACATTGTGTGCACTAGTCAAGACGTATATAACAAACATCTAGCTGGGAAAAAGCATACTGCTCAGGTAGGCTTGATGTTAAATAATGGGATTGGTCCATACATTGCTGCATTTAAGCATCAAGGCATTGGTCCTTGGAAGAAATCTCCAAAGAAAATCAAGGTTGATCAATCTGCATGGTGTGACGTATGTAAGATTAAATGTAATAGCAGGGACGTGTATATTGTACACTTATGCGGGAAGAAACACATGAAGAACTTGGAGAAACTGTCAAAACCAAAAATTGATGCTGGTGATGTTACTGCTGTTGTGAATGCTTTACAAGAAACAGCAAAGCCGATAATTGGGCCGCAGGAAAAGCCAGGTACAGATAAACCAAAATCACAGAAGGCACCAGAAATGGATATTGAGACAAAGAAGCGTAAAGTGGTAGAAGGTGGGGCTGCAGAAGCTTCTGTTAGAATTTGCACCCTATGCAATGTGGTGTGCAACAGCCAGACAGTTTTTGATACTCACCTCGTTGGGCATAAACACGCTGCAATGGCGAAGAAGCAGGGAGAGTCAACAGGGGAAACTACTTGCTGA 1227 0.4271 MYPQQQHHVPFTNVHQPYCSANPFLLSFPLNSDSAHHPPATDPLANSTPSSVAAPYSSQSFDSHNWIVKQADPVTFDHAVGPSHETSAASASFPITWNGTWSHQIFTNDATVVSPNQIRLSKPIRCEVCKIDCNSKDVYEKHILGKKHKRNLQVQTNPPNSSLAGPSYASVPSQTNSIQGKVSDGAAGKELKSKEQKLSNGGSTTDSAKVCTVCNIVCTSQDVYNKHLAGKKHTAQVGLMLNNGIGPYIAAFKHQGIGPWKKSPKKIKVDQSAWCDVCKIKCNSRDVYIVHLCGKKHMKNLEKLSKPKIDAGDVTAVVNALQETAKPIIGPQEKPGTDKPKSQKAPEMDIETKKRKVVEGGAAEASVRICTLCNVVCNSQTVFDTHLVGHKHAAMAKKQGESTGETTC* 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0961 408 SMART ZnF_U1_5 121 155 IPR003604 GO:0003676|GO:0008270
Apr1g0961 408 SMART ZnF_U1_5 270 304 IPR003604 GO:0003676|GO:0008270
Apr1g0961 408 SMART ZnF_U1_5 206 240 IPR003604 GO:0003676|GO:0008270
Apr1g0961 408 SMART ZnF_U1_5 365 399 IPR003604 GO:0003676|GO:0008270
Apr1g0961 408 MobiDBLite consensus disorder prediction 149 205 - -
Apr1g0961 408 MobiDBLite consensus disorder prediction 150 182 - -
Apr1g0961 408 MobiDBLite consensus disorder prediction 328 351 - -
Apr1g0961 408 PANTHER ZINC FINGER RNA-BINDING PROTEIN 14 235 - -
Apr1g0961 408 PANTHER ZINC FINGER RNA-BINDING PROTEIN 251 401 - -
Apr1g0961 408 MobiDBLite consensus disorder prediction 41 56 - -
Apr1g0961 408 PANTHER - 251 401 - -
Apr1g0961 408 PANTHER - 14 235 - -
Apr1g0961 408 SUPERFAMILY beta-beta-alpha zinc fingers 365 398 IPR036236 -
Apr1g0961 408 Pfam Zinc-finger of C2H2 type 370 392 - -
Apr1g0961 408 Pfam Zinc-finger of C2H2 type 125 148 - -
Apr1g0961 408 Pfam Zinc-finger of C2H2 type 274 297 - -
Apr1g0961 408 Pfam Zinc-finger of C2H2 type 210 233 - -
Apr1g0961 408 SUPERFAMILY beta-beta-alpha zinc fingers 104 154 IPR036236 -
Apr1g0961 408 SUPERFAMILY beta-beta-alpha zinc fingers 269 304 IPR036236 -
Apr1g0961 408 Gene3D Classic Zinc Finger 110 155 - -
Apr1g0961 408 Gene3D Classic Zinc Finger 186 239 - -
Apr1g0961 408 Gene3D Classic Zinc Finger 259 304 - -
Apr1g0961 408 Gene3D Classic Zinc Finger 344 400 - -
Apr1g0961 408 SUPERFAMILY beta-beta-alpha zinc fingers 203 237 IPR036236 -
Apr1g0961 408 SMART c2h2final6 273 297 IPR013087 -
Apr1g0961 408 SMART c2h2final6 124 148 IPR013087 -
Apr1g0961 408 SMART c2h2final6 368 390 IPR013087 -
Apr1g0961 408 SMART c2h2final6 209 233 IPR013087 -
Apr1g0961 408 MobiDBLite consensus disorder prediction 337 351 - -
Apr1g0961 408 MobiDBLite consensus disorder prediction 36 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0961 Apr-Chr1 14185572 14189718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0961 180 395 C2H2 Transcription Factor Family AT5G61190 26.840 4.74e-18 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr1g0961 zf-met 1.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0961 - - aprc:113848135 848.58