Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0958 ATGGAAATGACGGAGGAACAGCGAAAACGAGCGGAAGCAAACCGTGCAGCGGCCATCGCAAAACGAAAGTTATTCCTCGAATCGCAAAAAAGCAACAACAACCCATGGCAGCTTTTCAGGTGCCAGAAATTATCCCAACACCAACCCCTCTCTGAACCACACAAGTTCCTCGCAAGACTCGAAATATGCTCCCCTGATTCCTTCTCCATCACTCCTCTCCCCCTCCCAGCCTTCCCCTTCCCCGGTCACCGCCATTGCCTCACCGCACTTAACTCCATTCTCTCTCACCTCATGCCCTCTCATTTCACGCAAACAAGCGAGGGTCTCAAGGCCTCTGTGTACAAGCTCCACCACTACTGTGCGGTGCTCAAGCACTTGAAAGGTGCGGTGGAGACACTGCAAGTCGAGGAGATTCCGTGGGCCACGTTCAACGTCGTCGAGCGTCTCTCCCATTCCTTTGCGGCGGGGATGTGGACGCCGCTGCGCCCCGAACATTTGACCGATGAAGAGGTGGATCGGTTGATCGCCAAGCTGCCGAGGTCTCTCTTGCACGTGTTGCTCCCTTTTCAGCTCGATGGCTTGAGGTTTGCCTTGCGAAGAGGCGCGCGCTGCCTCATTGCCGATGACATGGGACTCGGGAAAACCCTTCAGGCTATTGCTATTGCAGGATGTTTCTTGGATGAAGGGTCTGTACTTGTTGTTTGCCCTGCTGTGTTGCGCTTCTCATGGGCCGAGGAATTGGAGCGTTGGCTTCCTTTCTGCTTGCCTGCTGATATTCATCTCGTTTTTGGCCATCAAGACAACCCTATATATTTAACAAGAAGCCCCAGAGTTGTGGTTATTTCTTATACCATGCTTCATCGTCTAAGGAAGAACATGCTTGAACGTGAATGGGCTCTCCTGATTGTAGACGAATCTCATCATGTGCGATGTACGAAGAAAACCTCAGAACCAGGAGAGATAAAGGCTGTTCTTGATGTGGCTTCAAGAGTCAAGCGTATAATCCTGCTATCAGGCACACCTTTGTCAAGACCGTACGACATATATAATCAGATAAATATGCTATGGCCTGGTTTGCTGGGAAAGACTAAATATGAGTTTGCAAAAACATATTGTGATTTCAAATATATCAAAGGCGTACAAGGAAAATATTTTGCGGATTATTCAAGGGGCATTCGCTTGGAAGAGTTGAACGTGTTACTAAAGCAAACTGTTATGATAAGGCGTCTGAAGGAGCATGTGTTGCTACAGTTACCTCAGAAACGCCGGCAAATTATACGACTGTTGTTGAAGAGATCAGATATAGTTGCTGCAAAAACCGTGGTTGGGGTATTGAATATTGATGCCTGTGAAAGGGCAAGTGAAGACATGCCTTTGGAAAACTTGGATGAACCTGATGGAAAGCTTTCTTATCAAGAACTTGGAATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCTCTCCATCCACTCATTGCAGGATCAGAGAATGCTTCAAAAATGATAATTTTTGCACATCACCTCAAAGTTCTTGATGGAATACAGGAGTTTATATGTGAGAAAGGGATAGGTTTTGTGCGAATTGATGGAAACACTCTTGCCAGAGATAGGCAATCAGCAGTAGTCTCATTTCAATCATCACCAGAGGTTAAAGTTGCGATAATAGGTATTCTAGCAGCAGGTTTTGGACTTGATTTCTCAATGGCACAAGATGTTGTGTTCTTGGAGCTACCAAAGTGCCCAACTGTTATGCTTCAGGCTGAGGATAGAGCTCATCGACGGGGGCAAACAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTTGGATGAATCACATTGGAAAAATTTGAACAAAAGTCTGCAACGAGTTTCATCTACAACTGATGGCAAATATAATGCAATGAAAGAGATAGAGGTTAAAGGTATTTCTTATTTAAACTCATCTTTGAAAGCTGATAGTTGTGAAGCACAACCTGCATGCAAAGATGCATTGAGTGAAGCACAATTAGATAAGCAACCTTCTGCTGTAAATTCAAATGCATCCGAAGAAAATCAAGATGATAATTCTGATGAGGGTAATTTTGTAAATAAATCAATTCAGAGTGCTAATATTATGGCTGATAATGCTGCCTGTGAAGATTTAGGCAAGGCTTCAGTTCTGGGTGGAACTTATGATGTAGATGTTTTTGATGCCAATGAGAGATGTTCCGAAAAGAGTTTTGAAGACAAAAATCAATTGCAGGATATGAAATCAATTTCAACAACACAAACAGATCACAACCAGCCTGTTCATCCGGTTGAAACTGACAGACAGTGTTCTAATCAAGTTGATTCTCTGCGATTTGAGGTGAGCCCATACACTGGACGGATCCACTTGTATACTTGCATTCTGGGGACAGATAAAAGACCACAGCCACTTTATGAAAATTTTCGACCAGAGGAACTTGAGTTGTTAAGTTTTGTTGATGGAGAGAAACAGAAAGTAGAGTTTATATCTCTCAAGGATGACCCTGCCTATAGGCATGCACTTCTGGCTTTTGCAGAGGAGTGGAAGAATTTGAGGTCAATTGAACGCAGGAAGTTACTTGGAAAACCTTTACAACTTCCTTTGGCTGTTGAATTATGCTACTTGAGTGAAAGCAATAACCACAACAACAAAGGATTATTAAATGGTGGAAGTCGAAGACGCATGACACCCTTGATGGAGATTAGCCATCCTTTACCATCAGATGCTGTTTGGAAGAAGGTTTATCTGCGAAGTGGCCTCGGTAAGAAGGAAAAAGAATACACTCAAGGCTGGAGTCTTACAGATGAGCCACTCTGTAAGCTTTGTCAAAAGCAATGCCTGGGTACCAATGCCAAGACACCTGAATTTTTTGAAGATCTTTTTTGTAATCTTGTCTGCTATGAAGAGTATCGTATGAGAACTAGTAACAGATTCGTCCGTCAGGAACTTTTCCAAATTGAACATGGTGTGTGCACAAATTGCCACTTGGACTGTCATAAGCTTGTTGAGCATATAAGACCTTTGTCATTGGAAAGGCGGCGGGAGTACATAGATAAAGTAGCACCACAAATTGCAAATCGAAAGAACATGCTTGAGAAGCTTGTCAATGATCCGACTGAAGGCAATGCATGGCATGCTGATCATATTGTTCCAGTATATCAAGGCGGAGGTGAATGCAAGCTGGAGAATATGAGGACACTTTGTGTAGCATGCCATTATGATGTTACTGCCGCACAATGTGCTGAGCGGCGTATAACAAGAGCAAATGCCAGGAAACAACTAAAAGTGTTAATGAATAACATGAAAAATGGTATAAAGGGTATAGCTGGCACTAATATCAAGGACCATAGCCTTCCCGAGGAACAAGGAAGTGTACTTGAGGATGAGCTTTTAGTCAAGGTTCCTGGAAGTGCCTATTCCCTGGCTGACAGCCTGACAGCTAAGAAAGTGGAGATGCCGCCTGGAAGGGGTTGTAAATAA 3495 0.4366 MEMTEEQRKRAEANRAAAIAKRKLFLESQKSNNNPWQLFRCQKLSQHQPLSEPHKFLARLEICSPDSFSITPLPLPAFPFPGHRHCLTALNSILSHLMPSHFTQTSEGLKASVYKLHHYCAVLKHLKGAVETLQVEEIPWATFNVVERLSHSFAAGMWTPLRPEHLTDEEVDRLIAKLPRSLLHVLLPFQLDGLRFALRRGARCLIADDMGLGKTLQAIAIAGCFLDEGSVLVVCPAVLRFSWAEELERWLPFCLPADIHLVFGHQDNPIYLTRSPRVVVISYTMLHRLRKNMLEREWALLIVDESHHVRCTKKTSEPGEIKAVLDVASRVKRIILLSGTPLSRPYDIYNQINMLWPGLLGKTKYEFAKTYCDFKYIKGVQGKYFADYSRGIRLEELNVLLKQTVMIRRLKEHVLLQLPQKRRQIIRLLLKRSDIVAAKTVVGVLNIDACERASEDMPLENLDEPDGKLSYQELGIAKLSGFREWLSLHPLIAGSENASKMIIFAHHLKVLDGIQEFICEKGIGFVRIDGNTLARDRQSAVVSFQSSPEVKVAIIGILAAGFGLDFSMAQDVVFLELPKCPTVMLQAEDRAHRRGQTNAVNVYIFCAKDTLDESHWKNLNKSLQRVSSTTDGKYNAMKEIEVKGISYLNSSLKADSCEAQPACKDALSEAQLDKQPSAVNSNASEENQDDNSDEGNFVNKSIQSANIMADNAACEDLGKASVLGGTYDVDVFDANERCSEKSFEDKNQLQDMKSISTTQTDHNQPVHPVETDRQCSNQVDSLRFEVSPYTGRIHLYTCILGTDKRPQPLYENFRPEELELLSFVDGEKQKVEFISLKDDPAYRHALLAFAEEWKNLRSIERRKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSRRRMTPLMEISHPLPSDAVWKKVYLRSGLGKKEKEYTQGWSLTDEPLCKLCQKQCLGTNAKTPEFFEDLFCNLVCYEEYRMRTSNRFVRQELFQIEHGVCTNCHLDCHKLVEHIRPLSLERRREYIDKVAPQIANRKNMLEKLVNDPTEGNAWHADHIVPVYQGGGECKLENMRTLCVACHYDVTAAQCAERRITRANARKQLKVLMNNMKNGIKGIAGTNIKDHSLPEEQGSVLEDELLVKVPGSAYSLADSLTAKKVEMPPGRGCK* 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0958 1164 Pfam Helicase conserved C-terminal domain 493 595 IPR001650 -
Apr1g0958 1164 Gene3D - 414 696 IPR027417 -
Apr1g0958 1164 MobiDBLite consensus disorder prediction 671 697 - -
Apr1g0958 1164 Gene3D - 163 405 IPR038718 -
Apr1g0958 1164 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 3 1104 - -
Apr1g0958 1164 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 195 359 IPR014001 -
Apr1g0958 1164 Pfam SNF2-related domain 203 436 IPR000330 GO:0005524|GO:0140658
Apr1g0958 1164 Pfam HNH endonuclease 1047 1078 IPR002711 GO:0003676|GO:0004519
Apr1g0958 1164 CDD SF2_C_SNF 477 606 - -
Apr1g0958 1164 CDD HNHc 1041 1081 IPR003615 -
Apr1g0958 1164 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 487 641 IPR001650 -
Apr1g0958 1164 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 3 1104 - -
Apr1g0958 1164 SMART ultradead3 182 377 IPR014001 -
Apr1g0958 1164 Gene3D - 972 1107 - -
Apr1g0958 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 648 IPR027417 -
Apr1g0958 1164 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 409 IPR027417 -
Apr1g0958 1164 SMART helicmild6 512 595 IPR001650 -
Apr1g0958 1164 Coils Coil 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0958 Apr-Chr1 14112020 14131616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0958 500 648 RAD5 or RAD16-like Gene Family AT1G11100 35.099 4.21e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Apr1g0958 SNF2_N 1.9e-23 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0958 K25861 - gmx:100788690 1887.08