Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0957 ATGTCTAATTACGAGGAGGTAGCAGAACTGATTTGGGAAAATGGCCACGTGTCGATGCATGGGCTTGGTGGGCTTCAACATACTTCCGGGGAAAAGCCCATATTGGGTGGAGCCCATGATACATTAGAGTCAATTGTGAAACAAGCCACATGGCAACAGCATTATGAACCGGGGAAGTGGGTTGGGGAAGGCCATGCCCCTCATAGTATAAACTCCATTGCTGCATCCTCTGGTGAACATGGTGCGGTGCCAACGTTGTCAAGGAGGCGAGCATGGTCCAACACCGATTACCGTGGCACAAAATTTGGTTCCAAAAATGCTAATGTTAATGTGTTGGAAGAATGTGACGTTCATAGCGGTTGTGCTAGTGCTGCTGCCACGTTTTGTAGGGACAATGATACAACCATGATCACATCCCCTTCTCTTCAATCTGCTCCAAGCTTGAAGACTGTGGAGGAAGATTCTGCTTGTCACTGTGGATCGGACATTCGAGATAATCAAGATGACAGAGACAGTAAAGCAGAAACAGGCCAAACCAATTCTAAAAGACGAAGTCGAACTGCTGCTATCCATAACCAGTCTGAGCGGAAAAGAAGAGATAGAATTAATCAGAAAATGAAAGCCTTGCAGAGATTGGTACCTAATGCAAGTAAGACTGATAAAGCATCGATGTTAGACGAGGTGATTAACTACTTAAAGCAGCTTCAAGCACAGATCCAAATGATGAACATGACAAGCATGCCCCAAATGATGGTACCTTTAGCCATGCAACAACAGCTTCAGATGTCAATGCTAGCCAGAATGGGTGCTGGGCTTGGCATGGGAATGGGAATGGTAAACATAAACAACATGGGTACTCACACAACTGCTCCAAGGCCATTGATACCACAACTTATTCAACCAACCACAATTGGAGCTAACCCTACCCTCCCTATGTTTGTTGCCCCTTCCTTTATGATGCCTTCTTTGATTCAACCACATGCCCCTGCACCTCCAAAGCCCCAACTTGCTGCATCTTCAGCCTCCAATATTCCCTCAATTCCTTTGCCTCATCCATATAACCCTAGTCTTACACAAACAGTGAATATGGATATCCTCAACAACATGGCAGCACTTTACCGACAACAAATGAGTCAGAACAATCAAGCCTTGAGCAGCATGTCCCAACCACACAATGAGCGAAGCCGTTAA 1191 0.4559 MSNYEEVAELIWENGHVSMHGLGGLQHTSGEKPILGGAHDTLESIVKQATWQQHYEPGKWVGEGHAPHSINSIAASSGEHGAVPTLSRRRAWSNTDYRGTKFGSKNANVNVLEECDVHSGCASAAATFCRDNDTTMITSPSLQSAPSLKTVEEDSACHCGSDIRDNQDDRDSKAETGQTNSKRRSRTAAIHNQSERKRRDRINQKMKALQRLVPNASKTDKASMLDEVINYLKQLQAQIQMMNMTSMPQMMVPLAMQQQLQMSMLARMGAGLGMGMGMVNINNMGTHTTAPRPLIPQLIQPTTIGANPTLPMFVAPSFMMPSLIQPHAPAPPKPQLAASSASNIPSIPLPHPYNPSLTQTVNMDILNNMAALYRQQMSQNNQALSSMSQPHNERSR* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0957 396 SMART finulus 192 241 IPR011598 GO:0046983
Apr1g0957 396 Coils Coil 192 212 - -
Apr1g0957 396 MobiDBLite consensus disorder prediction 161 180 - -
Apr1g0957 396 Gene3D - 180 246 IPR036638 GO:0046983
Apr1g0957 396 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 186 235 IPR011598 GO:0046983
Apr1g0957 396 PANTHER TRANSCRIPTION FACTOR PIF7 5 391 - -
Apr1g0957 396 MobiDBLite consensus disorder prediction 161 200 - -
Apr1g0957 396 CDD bHLH_AtPIF_like 186 248 - -
Apr1g0957 396 Pfam Helix-loop-helix DNA-binding domain 191 236 IPR011598 GO:0046983
Apr1g0957 396 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 246 IPR036638 GO:0046983
Apr1g0957 396 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 391 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0957 Apr-Chr1 14067554 14071630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0957 6 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 43.307 9.99e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0957 HLH 3.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0957 - - gmx:102667566 444.891