Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0953 ATGAGTTTTACTCAAAGAAGAAAAACACATAGCACTAGAGAAGCATCATTAATGTCAGAACAGGAAACCGATTCACGGGGCTTCCTGTTTGTCTGTTTCTTGATCCTTCTCGCAGGTAAATTAGTTGCTGGGGATTCATTGGAAACGGACAAACAAGTTCTGCTGAAGCTGAAATCGTACTTGCAAAACCAAACAGTAGCAAACAAAGGAGGGTTGAATTGGAACAAGAACACTTCAAATCCATGTGAATGGTCAGGAATCTCGTGCAGCCTATTTAATGGGACAAATTGGAGGGTCGTGAAAATAGACATCTCTGAGAGTGAGATTGCTGGTAAGATATTCAACAACTTCTCACAACTTACGGAGCTCACACACCTGGATATCTCTTGGAACTCGCTCTCTGGGGTGATTCCCGAGGACTTAAAGGAGTGCCACAAGCTTGTGTATCTCAATCTCTCCCATAATCTGCTAGAGGGTGAGCTGAATTTGAAAGGCTTGACACAGTTGCAAACATTGGACTTGTCTCTTAATAGGTTTGATGGGGAACTTGGGTTGAGTTTCCCTGCCATTTGTGACAGTTTGGTCAGTTTGAATGTTTCAGCTAATCATTTAAGTGGCGGGATTGATGGATTCTTTGACCAATGCTTGAGGTTGAAATACTTGGATTTGAGCACCAACAATCTGAGTGGGGCCTTGTGGACGGGATTTTCCAGGCTGAGTGAGTTTTCAGTTTCTGAGAACCATCTCAATGGGATTGTTCCTTCCCAGGCTTTTCCAATGAATTGTAGCCTTGAAAAATTGGATCTTTCTTTAAATGGGTTTGTTGGTAGAGCTCCCAAGGAGGTTGCTAACTGCAAGAATTTAGTGGCTCTTGATCTTTCTAGTAACAGTTTTACTGGAGATGTTCCCAGTGAATTTGGGTCCATTTCTGGTCTAGAATCATTGTTCTTGGAGAACAACAGTTTCTCAAGAGATCTTCCTGAGACCCTTTTGAACTTGACCAAATTGTTTATCTTGGATTTGAGCAGAAACCGGTTTGGTGGGGAGGTACAGAATATTTTTGGGAAATTCAAGCAACTGAAGTTTCTTATGCTGAACTCAAATTTCTACACTGGAGGGTTGGATACATCAGGCATTTTTACTTTGACAAACCTTAGCCGCTTAGACCTGAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATCTCACAAATGTCTGGACTCACTTTCTTAACCTTAACCAACAACCAGTTCTCTGGACCTGTTCCATCTGAATTGGGAAAGTTGACTCGCCTTGTAGCACTTGAACTTGCTTTCAACAGTTTCAGTGGACCAATCCCACCAAGCCTTGGAAACTTGAGTTCTCTCTTATGGTTAACCATTTCAGATAATTCATTAACAGGGGAAATCCCACAAGAGTTGGGAAACTGCACTAGTCTGTTATGGTTGAACCTTGCAAACAACAAACTATCTGGGAAATTTCCTTCTGAATTGACAAGAATTGGAAGCAATGTAGGTGCCACATTTGAGGCAAATCATAAAAGCATTGGTCGAGTTGTTGCTGGCAATAGCGAGTGCGCATCAATGAAGAGATGGATACCTGCTGATTACCCTCCATTCAGCTTTGTGTATTCCATCCTAACAAGGAAGAATTGTAGAGCCCTTTGGGACAGATTGCTAAAAGGATATGGTATTTTCCCCATGTGCACATCTGAGCCCTCTTCTAGATCAACACATATATCAGGGTATGTTCAGCTAAGTGGGAACCAGTTGAGTGGTGAAATTCCATCAGAAATTGAAAACATGCTGAAGTTCAGCATGTTGCATTTGGGGGATAACAAGTTCTCTGGGAATTTTCCTCCAGAGATGGTAAATTTGCCACTTGTGGTCTTGAACATGACCAGAAACAATTTTTCAGGTGAAATTCCAAGGGAAATTGGCAGCATGAAGTGTCTACAAGATCTGGATTTGTCTTGGAACAATTTCTCTGGAACATTTCCCGTAAGTTTGGCCCACTTGGATGAACTTAGCAGGTTCAACATCTCATACAATCCCCTCATATCTGGTGTAGTCCCACCAGCTGGACATTTGCTCACTTTTGACAGAGATTCATATTTGGGTGACCCCCTCTTGAGCCTCCCAAAGTTCTTTAATATCTCTGATGAAAGAAACAACACTCTTCACAAAGTCTTGAAACGACCCACAAAATGGTCTTTGTTTTTAGCTCTTTCGCTAGCCATCTTGGTCTTTGGACTTCTTTTTCTTGTAATTTGTTTCTTGGTGAAAACTCCATCTGTGGAACCAGGATACCTCTTGAAGGATAGGAATAAGCAAGGGCATGATTCAAGCAGCTCCGGATCCTCACCATGGTATTCTGATACCGTTAAGATATTCCACTTGAACCAGACAGTTTTCACACATGCAGACATCTTGGAAGCAACTGGAAACTTCAAAGAGGACAGGGTCATAGGAAAGGGTGGCTATGGAACAGTGTATAGAGGAGTGTTTCCTGATGGGAGAGAAGTGGCAGTGAAGAAGCTCCAAAGGGAAGGAATTGAGGGTGAAAAAGAATTCAGAGCTGAAATGAAGGTTTTGAGTGGTCAAGGATTTGGCTGGCCTCATCCAAACCTTGTCACACTCTATGGATGGTGCCTCTATGGTTCACAGAAAATACTTGTTTATGAGTACATAGGAGGTGGAAGCTTGGAGGATCTTGTGACTGATGCAACAAGGTTGACATGGAGGAGGCGCCTAGAAGTTGCAATTGATGTGGCTCGGGCACTGGTCTATTTACACCATGAATGCTACCCTTCTATTGTGCATAGAGATGTGAAGGCTAGCAATGTGTTGCTGGACAAAGATGGGAAGGCCAAAGTCACAGATTTTGGACTTGCTAGAGTTGTTGATGCTGGAGATAGTCATGTGAGCACAATAGTGGCTGGCACAGTGGGCTATGTTGCACCAGAATATGGGCATACATGGCAAGCCACCACAAAAGGGGATGTGTACAGTTTTGGGGTGGTGGTTATGGAGCTAGCAACTGGTAGAAGAGCAGTGGATGGAGGGGAAGAGTGTTTGGTGGAGTGGACTAGGCGTGTTATGGGTTCTGGAAGACAAGGGTTGAGTTTGTGCCATTCTGTGCCATTTTTGTTGATGGGGTCTGGGCTAGTTGAGGGTGCAAAGGAGATGGTTCAGTTGCTCCATGTTGGAGTGAAGTGCACTCATGATGCACCACAGGTTAGGCCTAACATGAAGGAGGTTCTAGCTATGCTTATTAAGATAAACAATCCCAATGGAGACTCAAATTATGAGTACCTTGTGTAG 3327 0.4316 MSFTQRRKTHSTREASLMSEQETDSRGFLFVCFLILLAGKLVAGDSLETDKQVLLKLKSYLQNQTVANKGGLNWNKNTSNPCEWSGISCSLFNGTNWRVVKIDISESEIAGKIFNNFSQLTELTHLDISWNSLSGVIPEDLKECHKLVYLNLSHNLLEGELNLKGLTQLQTLDLSLNRFDGELGLSFPAICDSLVSLNVSANHLSGGIDGFFDQCLRLKYLDLSTNNLSGALWTGFSRLSEFSVSENHLNGIVPSQAFPMNCSLEKLDLSLNGFVGRAPKEVANCKNLVALDLSSNSFTGDVPSEFGSISGLESLFLENNSFSRDLPETLLNLTKLFILDLSRNRFGGEVQNIFGKFKQLKFLMLNSNFYTGGLDTSGIFTLTNLSRLDLSFNNFSGPLPVEISQMSGLTFLTLTNNQFSGPVPSELGKLTRLVALELAFNSFSGPIPPSLGNLSSLLWLTISDNSLTGEIPQELGNCTSLLWLNLANNKLSGKFPSELTRIGSNVGATFEANHKSIGRVVAGNSECASMKRWIPADYPPFSFVYSILTRKNCRALWDRLLKGYGIFPMCTSEPSSRSTHISGYVQLSGNQLSGEIPSEIENMLKFSMLHLGDNKFSGNFPPEMVNLPLVVLNMTRNNFSGEIPREIGSMKCLQDLDLSWNNFSGTFPVSLAHLDELSRFNISYNPLISGVVPPAGHLLTFDRDSYLGDPLLSLPKFFNISDERNNTLHKVLKRPTKWSLFLALSLAILVFGLLFLVICFLVKTPSVEPGYLLKDRNKQGHDSSSSGSSPWYSDTVKIFHLNQTVFTHADILEATGNFKEDRVIGKGGYGTVYRGVFPDGREVAVKKLQREGIEGEKEFRAEMKVLSGQGFGWPHPNLVTLYGWCLYGSQKILVYEYIGGGSLEDLVTDATRLTWRRRLEVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKDGKAKVTDFGLARVVDAGDSHVSTIVAGTVGYVAPEYGHTWQATTKGDVYSFGVVVMELATGRRAVDGGEECLVEWTRRVMGSGRQGLSLCHSVPFLLMGSGLVEGAKEMVQLLHVGVKCTHDAPQVRPNMKEVLAMLIKINNPNGDSNYEYLV* 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0953 1108 Gene3D Phosphorylase Kinase; domain 1 783 897 - -
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 407 524 IPR032675 -
Apr1g0953 1108 SMART serkin_6 818 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0953 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 940 952 IPR008271 GO:0004672|GO:0006468
Apr1g0953 1108 Gene3D Transferase(Phosphotransferase) domain 1 899 1105 - -
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 330 406 IPR032675 -
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 187 260 IPR032675 -
Apr1g0953 1108 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 19 1099 - -
Apr1g0953 1108 SMART LRR_typ_2 120 143 IPR003591 -
Apr1g0953 1108 SMART LRR_typ_2 382 406 IPR003591 -
Apr1g0953 1108 SMART LRR_typ_2 309 333 IPR003591 -
Apr1g0953 1108 SMART LRR_typ_2 454 478 IPR003591 -
Apr1g0953 1108 ProSiteProfiles Leucine-rich repeat profile. 146 167 IPR001611 GO:0005515
Apr1g0953 1108 SUPERFAMILY L domain-like 270 689 - -
Apr1g0953 1108 ProSiteProfiles Protein kinase domain profile. 818 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0953 1108 Pfam Protein kinase domain 818 1089 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0953 1108 Pfam Leucine rich repeat 116 157 IPR001611 GO:0005515
Apr1g0953 1108 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 261 329 IPR032675 -
Apr1g0953 1108 SUPERFAMILY L domain-like 98 306 - -
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 46 186 IPR032675 -
Apr1g0953 1108 Pfam Leucine rich repeat N-terminal domain 48 90 IPR013210 -
Apr1g0953 1108 Gene3D Ribonuclease Inhibitor 576 727 IPR032675 -
Apr1g0953 1108 ProSitePatterns Protein kinases ATP-binding region signature. 824 847 IPR017441 GO:0005524
Apr1g0953 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 19 1099 - -
Apr1g0953 1108 CDD STKc_IRAK 824 1095 - -
Apr1g0953 1108 SUPERFAMILY Protein kinase-like (PK-like) 796 1095 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0953 Apr-Chr1 13900993 13905298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0953 73 1100 Receptor kinase-like Gene Family AT4G39400 32.952 7.54e-142 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Apr1g0953 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0953 - - gmx:100781769 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0953 1 13900993 13905298 Apr1g0953 1 13900993 13905298 ECH