Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0947 ATGGCTTCTCAATCACCTCCCTATTCCCTCGACCATGCCCTTCGTGACGTCGACGATTACGTTCTGGAAAATGGACCACAAGGCTTGTCATGGGACACATTTCATTGTGTTTATGAGCTTGTGCAGAATGGCAATGCAGCATTTCGAGAGAACAGAATGGAAGAGGCGATCAACTTTTACTCAAGAGCCAATAACATCAAATTGGGTGATCCAATCATCCTTGGAAATCGAAGCACAGCTTATATTAGGATTACTCAATTTTTCATGCACAGAACATCATCATCTTCAGAACGTAGGCCCTTGAGTGGGCTTGATCCCACAACACTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGAACTTCAAAGTAATTCAGTAAAATCATATCTTTTAAAGGCCAATGCTCTTCTTTTGTTGGAGAAATATGAGAAAGCTCGGGATGTTATTCTTTCTGGCCTTCAAGTTGATCCTTTTAGTAATTCTCTTCGAGCTTCTCTTCAAAATTTGGAAAGAGTGTCATCTAGTTCAACAGGGATGAGTACACATGGACAACCTGAGAGAAACGATGACTTTGATTGCACTCTATGCCTGAAGTTACTGTATGAACCTGTTACAACCCCATGTGGACATTCTTTTTGCCGTTCATGTCTATATCAGTCAATGGATTGTGGGAACAGATGCCCGTTGTGCAGGACAGTTCTGTTTATTAGTCCCAGAACATGTTCGATCAGTGTGACATTGAAGAACATCATACAAAAGAACTTTCCTGAGGAATATGCTGAAAGGAAGCAAGAGCATGATGGTTTAATCAATGCTGGTGTAGATTTACTCCCTCTTTTTGTCATGGATGTTGTTATACCTTGTCAAAGGTTTCCACTTAATATATTTGAAGCTCGATATAGACTCATGGTAAGAAGAATAATGGAAGGCAATCGTCGGATGGGAATGGTTATAATTGATTCTTCAACTGGTTCCTTAGCTGAGTTTGCCTGTGAAGTGGAAATCACAGAGTGTGAGCCGCTTCCAGATGGTCGTTTTTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATAATCCGTTCTTGGGATCAAGATGGGTATCGTGTTGCAGAGGTTGAATGGATACAGGACATTATGCCAACCGAAGGGACAAGAGAAAGAGAGATTTTACAGGAGTTGACCTATAATGCAGCCGAAAGTGCTCGATCATGGATAGGAAGAGCTAAAGAAGCAGCAGGACATGATCAAAGAAAACTTGAGAAACTCGCCAGTGTTGAAGTAATGATGCCCTCACCAAGAGACCCTGAGCGCTTTAGTTTTTGGCTGGCTACCCTTTCCAATCGGAGGCCTTCGGAACGATTAGATCTCCTACGCATAAGAGATACCACGGAGAGGATTAGACGAGGCTTGATATTTCTCCGACAAGAGGAACAAGGCTGCAGAATTCAGTAA 1458 0.4225 MASQSPPYSLDHALRDVDDYVLENGPQGLSWDTFHCVYELVQNGNAAFRENRMEEAINFYSRANNIKLGDPIILGNRSTAYIRITQFFMHRTSSSSERRPLSGLDPTTLAELGLKDAEKLVELQSNSVKSYLLKANALLLLEKYEKARDVILSGLQVDPFSNSLRASLQNLERVSSSSTGMSTHGQPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLYQSMDCGNRCPLCRTVLFISPRTCSISVTLKNIIQKNFPEEYAERKQEHDGLINAGVDLLPLFVMDVVIPCQRFPLNIFEARYRLMVRRIMEGNRRMGMVIIDSSTGSLAEFACEVEITECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRVAEVEWIQDIMPTEGTREREILQELTYNAAESARSWIGRAKEAAGHDQRKLEKLASVEVMMPSPRDPERFSFWLATLSNRRPSERLDLLRIRDTTERIRRGLIFLRQEEQGCRIQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0947 485 SUPERFAMILY RING/U-box 190 258 - -
Apr1g0947 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 273 IPR013083 -
Apr1g0947 485 ProSitePatterns Zinc finger RING-type signature. 210 219 IPR017907 -
Apr1g0947 485 SMART ring_2 195 232 IPR001841 -
Apr1g0947 485 SUPERFAMILY PUA domain-like 279 475 IPR015947 -
Apr1g0947 485 SUPERFAMILY TPR-like 38 168 IPR011990 GO:0005515
Apr1g0947 485 SMART lon_5 278 477 IPR003111 -
Apr1g0947 485 PANTHER RING FINGER PROTEIN 127 4 477 - -
Apr1g0947 485 Gene3D - 277 379 IPR046336 -
Apr1g0947 485 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 4 477 - -
Apr1g0947 485 Gene3D - 417 477 - -
Apr1g0947 485 Pfam Zinc finger, C3HC4 type (RING finger) 195 232 - -
Apr1g0947 485 ProSiteProfiles Zinc finger RING-type profile. 195 233 IPR001841 -
Apr1g0947 485 Pfam ATP-dependent protease La (LON) substrate-binding domain 279 476 IPR003111 -
Apr1g0947 485 ProSiteProfiles Lon N-terminal domain profile. 276 477 IPR003111 -
Apr1g0947 485 Gene3D Tetratricopeptide repeat domain 36 182 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0947 183 236 C3H Transcription Factor Family AT1G74990 36.842 2.82e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0947 - - gmx:100802277 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0947 1 13685646 13695469 Apr1g0947 1 13685646 13695469 ECH