Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0944 ATGGAGTCTGAAGGGCTTAATTTGAACATAGAAAGTGGTGGTGGTGGTGGTGGGAATAACGGTAAGAGTGCCGATGGTTTCATTGATAGAAGTAAAGTGCGGATTTTGTTATGTGACAACGATTCCAAGAGTTCTGAAGAGGTTTTCACGCTACTTTTGAGATGTTCTTATCAGGTTACTTCAGTAAAGTCAGCGAGACAGGTAATTGATGCACTAAATGCAGAAGGGCAACATATAGATATCATACTGGCTGAACTTGACCTTCCAATGAAGAAGGGCATGAAGATGTTGAAGTACATAGCTCGGGATAAAGAGCTACGCAGAATCCCTGTTATAATGATGTCCGCACAAGATGAGGTATCCATTGTTGTTAAGTGCTTGAGACTTGGAGCAGCAGACTATCTAGTAAAGCCTTTGCGCACTAACGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGACTAGTAGAGAAGAACATCTTGACTTATGACTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTACTACCTTGTTCTCTGATGACACAGATGACAAGTCCAAGAGAAGCACAAATCCAGAGACAGGAATATCAGTTCAACAAGAGCAAGAGTCGACTGTTGCAATTGCTGCTGCTGTTGAGGAACCTCCTGATGCTCGTCCATCAGAATATCGGCCTGATGTGCATGGAATCAATGATCAAAGAACAGCTCATTTTTCTTCTGGTCCAAAGAAGAGTGAACTAAGGATTGGAGAATCATCGGCCTTCTTCACATATGTTAAAGCATCAATACTGAAGAGAAACTTTGAAGGGGTTGTTAATGTTGACAACAATGGTGCTACACATGTGAGGATGGAAGTTATGCATCAAGCATGTGCTAAACAAGGGGCTAATGACATTCCAGTTCGTGAAAATGGAGAGACATGTGAAAGTCAATCGCAAGATGACTTACCCAGCTGCAATAGTATACCTGATTCGTTCTCTATTGAGAGGTCTTGTACTCCACCGGCATCAATGGAAGTTTCACAGCAAAAGCACTACAAGGAAGAAAATTTACGTCAGTGTGTGATGCATCCAAGAAATGGGACTCGCTGTTCCGAGCTTGAAGTTTCTGGCATGGCCTCCCAACATGCTTATCCATATTATATTTCAGGAGTTGTAAATCATGTTATGATGCCTTCATCTGCGCAAATGTATCAAAAGAATATCCAGGACATGCAAAATCATCCTAATACATCTATGATTGCGCAGTACAATCATCTTCCCCAAGGTGGCCCTCATGCAACGGGGATGACATCCTTCCCATATTACCCAATGAGTATATGCTTACAACCTGGTCAGATTCCTGCGGCTCATTCATGGCCATCATTTGGAAGCTCAAGTTCATCTGAAGCAAAATTAAGTAAGGTTGATAGGAGAGAAGCAGCATTGATGAAGTTCAGGCAGAAAAGGAAAGAGCGCTGCTTTGATAAGAAAATTAGGTATGTTAACCGGAAACGACTTGCTGAAAGGCGGCCACGAGTGAGGGGACAGTTTGTCAGAAAGTTGAATGGTGCTAATGTGGACCTTAATGGACAACCTGCATCCATTGACTATGATGAAGATGACGAAGAAGATGACGATGAACAGGGTGCAAGAGATTCATCTCCTGAGGTTGCTTGA 1689 0.4263 MESEGLNLNIESGGGGGGNNGKSADGFIDRSKVRILLCDNDSKSSEEVFTLLLRCSYQVTSVKSARQVIDALNAEGQHIDIILAELDLPMKKGMKMLKYIARDKELRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLVEKNILTYDFDLVASDPSDANTNSTTLFSDDTDDKSKRSTNPETGISVQQEQESTVAIAAAVEEPPDARPSEYRPDVHGINDQRTAHFSSGPKKSELRIGESSAFFTYVKASILKRNFEGVVNVDNNGATHVRMEVMHQACAKQGANDIPVRENGETCESQSQDDLPSCNSIPDSFSIERSCTPPASMEVSQQKHYKEENLRQCVMHPRNGTRCSELEVSGMASQHAYPYYISGVVNHVMMPSSAQMYQKNIQDMQNHPNTSMIAQYNHLPQGGPHATGMTSFPYYPMSICLQPGQIPAAHSWPSFGSSSSSEAKLSKVDRREAALMKFRQKRKERCFDKKIRYVNRKRLAERRPRVRGQFVRKLNGANVDLNGQPASIDYDEDDEEDDDEQGARDSSPEVA* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0944 562 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Apr1g0944 562 MobiDBLite consensus disorder prediction 538 554 - -
Apr1g0944 562 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
Apr1g0944 562 Gene3D - 33 234 - -
Apr1g0944 562 MobiDBLite consensus disorder prediction 526 562 - -
Apr1g0944 562 Pfam CCT motif 482 524 IPR010402 GO:0005515
Apr1g0944 562 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 545 IPR045279 GO:0009736
Apr1g0944 562 MobiDBLite consensus disorder prediction 227 241 - -
Apr1g0944 562 MobiDBLite consensus disorder prediction 201 216 - -
Apr1g0944 562 SMART REC_2 33 148 IPR001789 GO:0000160
Apr1g0944 562 SUPERFAMILY CheY-like 29 158 IPR011006 -
Apr1g0944 562 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 6 545 - -
Apr1g0944 562 MobiDBLite consensus disorder prediction 181 254 - -
Apr1g0944 562 ProSiteProfiles CCT domain profile. 482 524 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0944 Apr-Chr1 13570571 13576851 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0944 22 560 Response Regulator Gene Family AT5G61380 51.274 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Apr1g0944 Response_reg 2.5e-17 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0944 K12127 - gmx:100799728 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0944 1 13570571 13576851 Apr1g0944 1 13570571 13576851 ECH