Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0936 ATGGAAAACGTTTTAGTCCTGAGTAAGGAAGAGGATCAGATGGATTTGCCTCCTGGGTTTCGTTTTCACCCAACTGATGAAGAGCTTATTAGTCATTACCTCTACAGAAAGGTAACTGACACAAATTTTTCTGCTAAAGCCATTGGAGAGGTTGACTTGAACAGGTCTGAGCCATGGGATTTGCCATGGAAAGCCAAACTGGGAGAGAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACTGGGTTGAGGACCAACAGAGCCACTGAGGCTGGATACTGGAAGGCCACAGGGAAAGACAAAGAGATTTACAGAGAAAAAACTCTTGTGGGAATGAAGAAAACTTTGGTTTTCTACAAAGGAAGAGCACCCAAAGGAGAGAAAACAAACTGGGTCATGCATGAGTATAGACTTGAGGGTAAATTCTCTGTCCACAACCTCCCCAAGACTGCTAAGAATGAGTGGGTGATTTGCAGGGTGTTTCAGAAGAGCTCAGGTGGCAAGAAGACACATATTTCTGGGATAATGAGGTTGGACTCTTATGGAAATGAATTGGGTTCTTCTAGTTTGCCTCCTCTCACTGATTCCTCACCTTCCATTGGCACCACCAAAGCACTTGGTGTCACTGAATCGGTTTACGTGCCCTGCTTCTCCAATCCAATAGATGTTCAAAGAGGGATGTTCGATTCCTTCAACAACAACACCCTTTATGGCCTTTCTTCAAACCATTCATTTTACTCTACTTGTGGGGTAACTCCACTTCAAGTTCCACCAAATTTGCCATTACCTGCTTCTGTTTGCAACCTCCAGGATCAGACAATTCTTAGAGCCTTACTGAATAACCATGGAAATGGATCAAGCTTGAGGAACAGTTTCGAACCAGAGAGGGAAATGATCAGTGTTTCACAGGAAACAGGTCTTACTACTGATGTGAACGCTGAAATCTCTTCAGGTGTGTTAAATTGTGATGTGGGTAGGAGGCACTTTGAGAATCAGCAGAACCCGCCTGCTTCAGCTGCACCAGTGGACCTTGCTAGCTTGTGGAATTATTAA 1062 0.4397 MENVLVLSKEEDQMDLPPGFRFHPTDEELISHYLYRKVTDTNFSAKAIGEVDLNRSEPWDLPWKAKLGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYREKTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSSGGKKTHISGIMRLDSYGNELGSSSLPPLTDSSPSIGTTKALGVTESVYVPCFSNPIDVQRGMFDSFNNNTLYGLSSNHSFYSTCGVTPLQVPPNLPLPASVCNLQDQTILRALLNNHGNGSSLRNSFEPEREMISVSQETGLTTDVNAEISSGVLNCDVGRRHFENQQNPPASAAPVDLASLWNY* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0936 353 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 349 - -
Apr1g0936 353 Gene3D NAC domain 25 170 IPR036093 GO:0003677|GO:0006355
Apr1g0936 353 SUPERFAMILY NAC domain 12 166 IPR036093 GO:0003677|GO:0006355
Apr1g0936 353 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Apr1g0936 353 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Apr1g0936 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0936 Apr-Chr1 13271046 13272633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0936 14 353 NAC Transcription Factor Family AT5G07680 58.480 8.98e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr1g0936 NAM 1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0936 - - gmx:547650 556.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0936 1 13271046 13272633 Apr9g2992 9 36784373 36786207 ECH
Apr1g0936 1 13271046 13272633 Apr1g0936 1 13271046 13272633 ECH