Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr1g0928 | ATGGCGCTTTTGGGGCTTCTCTTTGTGGGATTTCTCTCGCTTGGCTCATATGTCTCTGCGGCTGGTTATGGTTGGATTAATGCTCATGCAACCTTTTATGGAGGGGGTGACGCCTCTGGCACTATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGGTATGGTACAAACACTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGGTTAAGCTGTGGGGCATGTTTTGAGATTAAGTGTGTTAATGACAAAAGGTGGTGCCTTCCAAGTTCAATTGTGGTCACTGCAACCAATTTCTGTCCACCAAACAATGCACTCCCAAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCATTTTGATCTTTCCCAACCTGTCTTCCAACAAATAGCTCAATACAGAGCTGGAATAGTACCCGTGGCTTACCGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACAATCAATGGCCATTCATACTTCAACCTAGTTCTAATTACCAACGTTGGTGGTGCTGGTGATGTTCACGCAGTTTCCATCAAAGGTTCAAGAACTAATTGGCAACCAATGTCAAGGAACTGGGGTCAGAACTGGCAAAGCAATACTTACCTTAATGGTCAAAGCCTGTCCTTTAAGGTTACTACTAGTGATGGACGCACCGTGGTCTCTTACAATGTTGCACCTGCGGGCTGGTCCTTTGGTCAAACCTTCTCTGGCCACCAATACCTTTAA | 747 | 0.4672 | MALLGLLFVGFLSLGSYVSAAGYGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDKRWCLPSSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTFSGHQYL* | 249 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr1g0928 | 248 | PANTHER | EXPANSIN-A15 | 7 | 247 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 55 | 69 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 82 | 93 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 94 | 104 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 113 | 130 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 130 | 143 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 154 | 166 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 166 | 187 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 201 | 222 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | PRINTS | Expansin signature | 230 | 246 | IPR002963 | GO:0009664 | |
Apr1g0928 | 248 | SUPERFAMILY | PHL pollen allergen | 152 | 243 | IPR036749 | - | |
Apr1g0928 | 248 | Pfam | Expansin C-terminal domain | 156 | 233 | IPR007117 | - | |
Apr1g0928 | 248 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 165 | 244 | IPR007117 | - | |
Apr1g0928 | 248 | Pfam | Lytic transglycolase | 60 | 145 | IPR009009 | - | |
Apr1g0928 | 248 | Gene3D | - | 14 | 151 | IPR036908 | - | |
Apr1g0928 | 248 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 43 | 155 | IPR007112 | - | |
Apr1g0928 | 248 | SUPERFAMILY | Barwin-like endoglucanases | 24 | 173 | IPR036908 | - | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 24 | 39 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 42 | 60 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 64 | 82 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 138 | 154 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 192 | 206 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | PRINTS | Expansin/Lol pI family signature | 230 | 244 | IPR007118 | GO:0005576 | |
Apr1g0928 | 248 | Gene3D | - | 155 | 247 | IPR036749 | - | |
Apr1g0928 | 248 | SMART | dpbb_1 | 60 | 145 | IPR007112 | - | |
Apr1g0928 | 248 | PANTHER | EXPANSIN | 7 | 247 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr1g0928 | Apr-Chr1 | 13070199 | 13072223 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Apr1g0928 | 1 | 247 | Expansin Gene Family | AT2G03090 | 80.567 | 8.92e-152 | 421 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr1g0928 | - | K20628 | gmx:100802401 | 469.159 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Apr1g0928 | 1 | 13070199 | 13072223 | Apr9g2993 | 9 | 36806866 | 36809111 | ECH | |
Apr6g0206 | 6 | 2171435 | 2172743 | Apr1g0928 | 1 | 13070199 | 13072223 | ECH | |
Apr7g1505 | 7 | 22239167 | 22241129 | Apr1g0928 | 1 | 13070199 | 13072223 | ECH | |
Apr3g0928 | 3 | 24200278 | 24202378 | Apr1g0928 | 1 | 13070199 | 13072223 | ECH | |
Apr1g0928 | 1 | 13070199 | 13072223 | Apr1g0928 | 1 | 13070199 | 13072223 | ECH |