Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0928 ATGGCGCTTTTGGGGCTTCTCTTTGTGGGATTTCTCTCGCTTGGCTCATATGTCTCTGCGGCTGGTTATGGTTGGATTAATGCTCATGCAACCTTTTATGGAGGGGGTGACGCCTCTGGCACTATGGGTGGAGCATGTGGATATGGGAACTTGTATAGCCAAGGGTATGGTACAAACACTGCTGCTTTGAGCACAGCTTTGTTCAACAATGGGTTAAGCTGTGGGGCATGTTTTGAGATTAAGTGTGTTAATGACAAAAGGTGGTGCCTTCCAAGTTCAATTGTGGTCACTGCAACCAATTTCTGTCCACCAAACAATGCACTCCCAAATAATGCAGGTGGATGGTGCAACCCTCCCCTTCACCATTTTGATCTTTCCCAACCTGTCTTCCAACAAATAGCTCAATACAGAGCTGGAATAGTACCCGTGGCTTACCGAAGGGTCCCTTGCCAAAAGAGAGGGGGCATCAGATTCACAATCAATGGCCATTCATACTTCAACCTAGTTCTAATTACCAACGTTGGTGGTGCTGGTGATGTTCACGCAGTTTCCATCAAAGGTTCAAGAACTAATTGGCAACCAATGTCAAGGAACTGGGGTCAGAACTGGCAAAGCAATACTTACCTTAATGGTCAAAGCCTGTCCTTTAAGGTTACTACTAGTGATGGACGCACCGTGGTCTCTTACAATGTTGCACCTGCGGGCTGGTCCTTTGGTCAAACCTTCTCTGGCCACCAATACCTTTAA 747 0.4672 MALLGLLFVGFLSLGSYVSAAGYGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDKRWCLPSSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQQIAQYRAGIVPVAYRRVPCQKRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTNWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVVSYNVAPAGWSFGQTFSGHQYL* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0928 248 PANTHER EXPANSIN-A15 7 247 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Apr1g0928 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Apr1g0928 248 SUPERFAMILY PHL pollen allergen 152 243 IPR036749 -
Apr1g0928 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Apr1g0928 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Apr1g0928 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Apr1g0928 248 Gene3D - 14 151 IPR036908 -
Apr1g0928 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Apr1g0928 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Apr1g0928 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Apr1g0928 248 Gene3D - 155 247 IPR036749 -
Apr1g0928 248 SMART dpbb_1 60 145 IPR007112 -
Apr1g0928 248 PANTHER EXPANSIN 7 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0928 Apr-Chr1 13070199 13072223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0928 1 247 Expansin Gene Family AT2G03090 80.567 8.92e-152 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0928 - K20628 gmx:100802401 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0928 1 13070199 13072223 Apr9g2993 9 36806866 36809111 ECH
Apr6g0206 6 2171435 2172743 Apr1g0928 1 13070199 13072223 ECH
Apr7g1505 7 22239167 22241129 Apr1g0928 1 13070199 13072223 ECH
Apr3g0928 3 24200278 24202378 Apr1g0928 1 13070199 13072223 ECH
Apr1g0928 1 13070199 13072223 Apr1g0928 1 13070199 13072223 ECH