Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0927 ATGGCCACCGTCACCACCCAAGCTTCCGCCGCCATTTTTCGGCCATGTGCTTCAAAATCAAGGTTCCTCACCGGCTCTTCCGGTAAACTCAACAGGGAAGTGACTTTTAGGCCAATGGGGTGTCCTCCTTCTGCCTCTTTCAAGGTTCAAGCCAAGAAAGGAGAGTGGCTACCTGGCTTGCCCTCCCCAGCTTACCTCGATGGCAGTCTTCCTGGTGACAATGGGTTTGATCCTCTGGGGCTTGCTGAGGACCCGGAGAACTTGAAGTGGTATATCCAAGCTGAGCTTGTGAATGGACGTTGGGCCATGTTGGGTGTCGCAGGGATGTTGCTTCCTGAGGTTTTCACCAAAATTGGAATCATAAATGTGCCTAAATGGTATGATGCTGGGAAATCCGAGTACTTTGCATCATCCTCAACCCTCTTTGTGATTGAGTTCATTTTGTTCCATTATGTGGAAATCCGAAGATGGCAAGACATTAAGAACCCCGGCTGTGTCAACCAGGATCCCATCTTCAAGCAATACAGCTTAGCCCCGCATGAGTGTGGATACCCTGGTGGCATATTTAACCCCTTAAACTTTACACCAACTTTGGAGGCCAAAGAGAAGGAGCTTGCAAATGGGAGATTGGCGATGTTGGCATTCTTGGGATTTATTGTTCAACACAACGTGACAGGGCAAGGACCATTTGATAACCTCTTGCAGCACCTCTCAGACCCGTGGCACAACACCATCATTCAAACATTTAGTGGCAACTAA 759 0.4875 MATVTTQASAAIFRPCASKSRFLTGSSGKLNREVTFRPMGCPPSASFKVQAKKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLKWYIQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPKWYDAGKSEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQDPIFKQYSLAPHECGYPGGIFNPLNFTPTLEAKEKELANGRLAMLAFLGFIVQHNVTGQGPFDNLLQHLSDPWHNTIIQTFSGN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0927 252 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 252 IPR001344 GO:0009765|GO:0016020
Apr1g0927 252 Pfam Chlorophyll A-B binding protein 63 222 IPR022796 -
Apr1g0927 252 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 252 - -
Apr1g0927 252 Gene3D Chlorophyll a/b binding protein domain 63 242 - -
Apr1g0927 252 SUPERFAMILY Chlorophyll a-b binding protein 52 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0927 Apr-Chr1 13056943 13058505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0927 43 250 Chloroplast and Mitochondria Gene Families AT3G61470 52.535 3.60e-75 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0927 K08910 - gmx:100802922 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0927 1 13056943 13058505 Apr1g0927 1 13056943 13058505 ECH