Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0918 ATGAAGAAGAGACAAGTGGTGGTGAAAAGGGATGTGGCCAATACTACATCATCAGTGATGAGGAACATTCGATATGGGGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTGGATGGTTGCAGGGAGTTCATGGCAAGTACAGGGGAGGGAACTAGTGGGGCACTTACTTGTGCTGCTTGTGGCTGCCATCGGAACTTTCACAGAAAGGAAGTGCAAACTGAGGTTGTCTGTGAGTACTCTCCTCCTAATTCTGCTCGCTAA 273 0.4799 MKKRQVVVKRDVANTTSSVMRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGTSGALTCAACGCHRNFHRKEVQTEVVCEYSPPNSAR* 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0918 90 PANTHER BNAA09G44460D PROTEIN 2 87 - -
Apr1g0918 90 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Apr1g0918 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Apr1g0918 90 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Apr1g0918 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0918 Apr-Chr1 12875118 12875390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0918 1 88 Zinc finger-homeobox gene family AT1G18835 75.281 9.25e-42 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Apr1g0918 ZF-HD_dimer 6.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0918 - - gmx:100785967 172.555