Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0901 ATGTCTAGCAGGAGGTCACGGTCAAGGCAAACAAGTAGCTCAAGGAATATCACCGATGATCAGATCAATGATCTTGTTTCCAAGTTGCAACAGCTTCTTCCTGAGATTCGCGATAGGCGCTCTGACAAGGTTTCAGCTTCCAAGGTGTTGCAAGAGACATGCAACTATATTAGAAGCTTACACAGGGAAGTGGACGACCTAAGCGAGCGCTTGTCTGAGCTCTTGGCTACAACTGACACGGCACAAGCTGCAATAATTAGAAATTTACTTATGCTAGATCGGTCGAGTAGTTAA 294 0.4524 MSSRRSRSRQTSSSRNITDDQINDLVSKLQQLLPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSELLATTDTAQAAIIRNLLMLDRSSS* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0901 97 Coils Coil 57 77 - -
Apr1g0901 97 MobiDBLite consensus disorder prediction 1 20 - -
Apr1g0901 97 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 6 60 IPR011598 GO:0046983
Apr1g0901 97 PANTHER TRANSCRIPTION FACTOR PRE 1 91 IPR044293 GO:0006355|GO:0040008|GO:0046983
Apr1g0901 97 Gene3D - 18 88 IPR036638 GO:0046983
Apr1g0901 97 CDD bHLH_AtPRE_like 17 77 - -
Apr1g0901 97 Pfam Helix-loop-helix DNA-binding domain 20 61 IPR011598 GO:0046983
Apr1g0901 97 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Apr1g0901 97 PANTHER TRANSCRIPTION FACTOR PRE3 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0901 Apr-Chr1 12215097 12216332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0901 1 91 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47710 71.739 1.07e-38 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0901 HLH 7.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0901 - - aprc:113851739 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0189 6 1895836 1897432 Apr1g0901 1 12215097 12216332 ECH
Apr7g1491 7 22034125 22034783 Apr1g0901 1 12215097 12216332 ECH
Apr3g0899 3 23237889 23239006 Apr1g0901 1 12215097 12216332 ECH
Apr1g0901 1 12215097 12216332 Apr1g0901 1 12215097 12216332 ECH