Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0898 ATGGCAAATGAAAACAACTCAAACTCAACCAAGGAGCATGCGAGTTTCTGGACTCAAGCAAACGCTCTCCTTAGGAAGAATTTAACCTTTCAGAAACGAAATGTGAAGACAACCGTTAGGCTGATCATGTTCCCCTTCGTGTTGTGTCTGTTGCTGCTTTTGATGCAAAAGCTGATTGATAATCAATTGAACAAGGCTGAGAACAAGTGTGGCTGCATTTGTAGGAAGACACAAGGGGACACATGTATAGAGCAGGTTTGTGGGATTCAGTACTCGGATTTGGACCAAGTTTCCACGTGTCCCATTCCCAATCCTCCAGAATGGCCACCTTTGTTGCAATTGCCGGCTCCACAATACCGAGCTGTGAGAACGAATGTTCTGCCCGTTTCGGATTTTCCAAACGCCTCCTGTAGGAGAAATGGCTCCTGCCCTGTCACTATGCTCTTCACTGGCACTAACCAATCATTTGGAGAAATTATATCTGGGAATATGATTCCAAGTACCTTGAGTATAAATAACTCTGATATTATGGGTAGTTTGGCAACTAATGTCGTTGTGACAACAGAGGACACCAATTTTCTGGACCCTGCTTTCTTTTCGGATCTTCCTATTTATTATCTGCAAAGCAAGTGCACACAGAACTCTACATTCTCCATTTCTGTCCAAATATCAACCATTAACAAGCAGCAAGGTATGAGATGTGCTCAGGGTTTACGTTTATGGCGTAATAGTTCTTCTGAGGTGAACGATGAGCTATATAAAGGTTACCGAAGAGGGAACCCAGAGAGACAGATTGATGAGATATCTGCAGGTTATGATTTTCTAAATTCAAATGAGAATAGATATAATGTAAGCATATGGTACAACTCAACCTACAAAAATGAAACTGGCTTTGGTACTATTTCATTGGCACGTATTCCTCGTTCAGTGAATCTGGTATCAAATGCCTACCTACAGTTTTTGCTCGGAACTGGTACCAAAATGTTGTTTGAGTTTGTAAAGGAAATGCCAAAACCTGAGACCCCAACTAAGTTTGATTTGGCTTCGCTTCTGGGTGGTCTCTTCTTTACATGGGTCATCCTACAACTTTTCCCTATTGTCCTGACATCGCTAGTTTATGAGAGGCAACAAAAATTAAGAATCATGATGAAAATGCATGGCCTTGGTGATGGTCCATATTGGATGATTTCATATGGTTATTTTCTTGCCATATCCATTGTCTACATGCTGTGTTTTGTAATATTTGGCTCAGTCATAGGGTTAAAATTCTTTACTTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCCTCTATATAAATTTACAAATTTCACTGGCATTTCTATTGGCTTCCATGTTTTCAAATGTTAAGACCGCTACAGTAATTGCATATATAGGTGTGTTTGGAACTGGGTTATTAGCTGGCTATCTTTTCCAATTTTTTGTTCAAGATACATCCTTTCCGAGAGGGTGGATCATTGTTATGGAGTTGTATCCTGGATTTGCTTTATATCGTGGGTTGTATGAGTTTTCACAAGCTTCCTTTAATGGAGATGCTTCGGGGACTCATGGTATGCGGTGGGGAGATCTGAGTGATAGCACAAATGGAATGAAAGAGGTCTTGATTATCATTTTTGTGGAGTGGCTCTTGGTTCTTTTTTTTGCTTATTATATCGATCAAGTTTTGTCTTCTGGAAGAGGGAAAAGTCCTCTTTTTTTCTTGAAAGGATTTCAAAAGAAGCCTCCATCTTTTCGAAAGCCTAGCATCCAGAGGCAGGGATCTAAAGTTTTTGTCCAGACAGAGAAACCTGATGTCAGTCAAGAGAGGGAGAAGGTGGAGCAATTGCTACTTGAACCAACAATAAATCATGCAATTATATGTGACAACATGAGAAAGGTCTATCCAGGGAGGGACGGTAACCCAGAGAAAAATGCAGTGAGAGGGTTGTCTCTTGCTTTGCCTCAAGGAGAATGCTTTGGTATGCTTGGTCCAAATGGTGCAGGGAAGACTTCTTTCATCAATATGATGATTGGTCTTACGAAGCCAACCTCTGGTACAGCTTTTGTTCAAGGTCTTGACATAAGAGCTGATATGGATGGCATATATACTAGCATGGGCGTATGCCCACAGCATGACTTGCTTTGGGAAACCCTGACAGGAAGAGAGCACCTGCTCTTTTATGGCAGACTTAAAAATCTTGAAGGTTCAGCCTTAACACAAGCAGTGGAAGAATCTTTGAAAAGTGTAAACCTTTTTTATGGAGGAGTTGCTGATAAACAAGCAGGAAAATACAGTGGAGGAATGAAGAGGAGGCTTAGTGTTGCAATTTCACTGATTGGAGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACTGGACTAGACCCTGCATCAAGAAACAACTTATGGAATGTTGTTAAGCGTGCAAAACAGGATCGTGCAATCATTCTTACCACACATTCCATGGAAGAGGCAGAAGTCCTATGCGATCGATTAGGAATTTTCGTAGATGGAAACTTGCAGTGCATAGGAAATCCAAAGGAGTTGAAAGCCAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTGTGGATCATGAAAATGATGTAGAGAACTTGGTGCAGCAGCTTTCTTCAAATGCTAACAAGATATACCATATCTCTGGTACTCAAAAGTTTGAGCTACCAAAAGACGAGGTTAGGATAGCAAATGTATTCCGAGCGGTTGAAACCGCAAAGAAAAATTTCACAGTTTCTGCGTGGGGTTTAGCTGATACCACATTGGAAGATGTCTTCATTAAGGTTGCACGTGGGGCCCAGGCATTTGACACCTTGTCATAA 2847 0.4092 MANENNSNSTKEHASFWTQANALLRKNLTFQKRNVKTTVRLIMFPFVLCLLLLLMQKLIDNQLNKAENKCGCICRKTQGDTCIEQVCGIQYSDLDQVSTCPIPNPPEWPPLLQLPAPQYRAVRTNVLPVSDFPNASCRRNGSCPVTMLFTGTNQSFGEIISGNMIPSTLSINNSDIMGSLATNVVVTTEDTNFLDPAFFSDLPIYYLQSKCTQNSTFSISVQISTINKQQGMRCAQGLRLWRNSSSEVNDELYKGYRRGNPERQIDEISAGYDFLNSNENRYNVSIWYNSTYKNETGFGTISLARIPRSVNLVSNAYLQFLLGTGTKMLFEFVKEMPKPETPTKFDLASLLGGLFFTWVILQLFPIVLTSLVYERQQKLRIMMKMHGLGDGPYWMISYGYFLAISIVYMLCFVIFGSVIGLKFFTLNDYSIQFVFYFLYINLQISLAFLLASMFSNVKTATVIAYIGVFGTGLLAGYLFQFFVQDTSFPRGWIIVMELYPGFALYRGLYEFSQASFNGDASGTHGMRWGDLSDSTNGMKEVLIIIFVEWLLVLFFAYYIDQVLSSGRGKSPLFFLKGFQKKPPSFRKPSIQRQGSKVFVQTEKPDVSQEREKVEQLLLEPTINHAIICDNMRKVYPGRDGNPEKNAVRGLSLALPQGECFGMLGPNGAGKTSFINMMIGLTKPTSGTAFVQGLDIRADMDGIYTSMGVCPQHDLLWETLTGREHLLFYGRLKNLEGSALTQAVEESLKSVNLFYGGVADKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRNNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRLGIFVDGNLQCIGNPKELKARYGGTYVFTMTTSVDHENDVENLVQQLSSNANKIYHISGTQKFELPKDEVRIANVFRAVETAKKNFTVSAWGLADTTLEDVFIKVARGAQAFDTLS* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0898 948 SMART AAA_5 656 840 IPR003593 -
Apr1g0898 948 Pfam ABC-2 family transporter protein 273 555 - -
Apr1g0898 948 Gene3D - 618 893 IPR027417 -
Apr1g0898 948 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 12 948 IPR026082 GO:0016021|GO:0055085|GO:0140359
Apr1g0898 948 ProSitePatterns ABC transporters family signature. 765 779 IPR017871 GO:0005524
Apr1g0898 948 Pfam ABC transporter 648 792 IPR003439 GO:0005524
Apr1g0898 948 CDD ABC_subfamily_A 626 851 - -
Apr1g0898 948 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 863 IPR003439 GO:0005524
Apr1g0898 948 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 12 948 - -
Apr1g0898 948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 866 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0898 Apr-Chr1 12131037 12143982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0898 602 874 Calmodulin-binding Proteins AT2G36910 21.053 6.18e-12 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0898 1 12131037 12143982 Apr1g0898 1 12131037 12143982 ECH