Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0897 ATGGCTACCACCCGCGGGTTCACGCTGGTGGCGCAACAATACAAAGCACTGTTGAAAAAGAACCTTTTATTATCGTGGCGAAACAAGAGAGCTACTCTGCTTCAACTCTTGTCTCCTCTAATGTTCATCTTTCTCATATTTGCAATCGACAAGGCAATTAAGGCTCAAACATCAACCTCTTCTGCGTATAAAAAAGTCACAAACCCTCCCAATCAACCCTCTCCTCCTATCACTCCTTGCGAAAGCAAGTACTTCATAAAGCTTCCATGCTACGACTTCGTTTGGAGCGGTGACCAAAACGCAAAGTTTCACACCATTGTGGACCGCATCATGAACAACAACCCCGGCAGGCCCATACCTCCCTCTAAGGTGTTGTCGTTTGGGGATAAAGGTGAAGTGGATGCGTGGCTTTTGAGTAACCCTATGCGCGTTGCAGGGGCTCTTCATTTCGTGGAGAAAAACGACACCGTTATAAGCTATGGTATTCAAACGAATTCGACTACTCTTCCGAAACGAGGAAAATATGAAGATCCTACTGCTTCGTTCCAACTTCCTCTTCAGCTTGCTGCGGAGCGTGAAATTGCAAGATACCTAATTGGAGACTCGAATTTCAGTTGGAATGTGTTTTTGAGGGAATTCGCACACCCTGCTCGGATCCCTTTCTCTGCCGTGGGTTCAATTGGTCCAGCGTTTTTCCTCGCAATTGCCATGTTTAATTTTGTTCTTCAGATTAGCTCTTTGGTCACAGAGAAAGAGCTTAAACTTCGCCAGGCAATGACCATGATGGGCCTTTATGATGCTGCTTACTGGTTATCCTGGCTTACTTGGGAAACTGTTGTCACGATTATATCGTCCCTCCTCATAGTTCTCTTTGGAATGATGTTCCAGTTTAGTTTTTTCTTGAAAAACAGTTTTGCGATCCTGTTCCTTTTGTTCTTCCTTTTTGAACTCAATATGACTGGCTTAGCCTTCATGTTATCTGCTTTCATTCGGAAATCATCTTCGGCAACAACAGTGGGATTTTCTATATTTATTGTGGGCTTTGTGACTCAGCTTGTTGTACAAGCAGGATTTCCTTACTCAGATAGCATCTCCAAAACTTTCCGAAATGTTTGGTCATTATTCCCACCTAATCCTTTTGCTCAAGCATTACAAGTGCTTTCAGATGCAGTTGCTACTCCTGAAGATGATGGTATTAGCTGGAGTAAACGGGGGGAATGTGCTGCTAATGATGATAATTGTGTGATAACAATTAATGATATTTATATATGGCTTGTGGTTACGTTCTTTCTCTGGTTTGTTCTGGCCATCTACTTTGACAACATAATCCCAAATGCATCAGGGGTGAGGAAATCGATAATATACTTTCTAAATCCTAGTTACTGGATGGGAAAAGGAGGCCAAAAAGTGAAAGCCCCACGCCATGAGCAAATTACTCCAGATGATGAAGATGTCCTTGAAGAAGAAAACAAAGTGAAACAGCAACTAACAGAAGGTGTGGTTGACGCAAATGTTGCTGTTCAGATACATGGCCTTGCAAAGACATATCCTGGTACACTAAACATTGGGTGCTGCTGTAAATGTAAAAGGAGTACTCCTTACAATGCTGTTAAGGGTTTGTGGGTGAACTTTGCAAAAGATCAGTTATTTTGTCTTCTAGGGCCCAATGGAGCTGGAAAAACTACAGCTATTAATTGTCTGACGGGGATAACTCCAGTAACTAATGGAGATGCTTTGATTTATGGACATTCCATCCGAAGTTCTACTGGCATGTCAAACATTCGAAAGCTTATAGGAGTATGTCCTCAGTTTGATATCCTATGGGATGCACTGTCTGGTCAAGAACACCTTCAACTCTTTGCTACTATTAAAGGCCTGTCCCCAGCTTCCATAAAATCAATTACCCAGACGTCGTTGGCAGAGGTGAGACTCACAGATGCAGCCAAAGTGAGAGCTGGAAGTTACAGTGGAGGAATGAAACGTCGTCTGAGTGTTGCAATTGCCCTTATTGGTGACCCTAAGTTAGTCATTTTGGATGAACCGACTACTGGTATGGATCCAATAACAAGAAGGCATGTGTGGGACATAATAGAAAATGCAAAAAGAGGGCGTGCCATTGTTCTTACAACACACTCTATGGAAGAAGCTGACATTCTAAGTGACCGCATTGGAATCATGGCGAAGGGAAGGCTTCGCTGCATTGGTACCTCAATCAGATTGAAGTCAAGATTCGGAACTGGGTTTATTGCTAATATCAGCTTCTATGGAAACAATAATGAACGAAGTCCTGGCAATGGAGATGCAATATCGACAGAACATCGTGAGACCGTAAAGAAATTCTTTAAAAATCGTTTAGATGTGGTGCCAAAAGAGGAGAACAATAACTTCCTAACTTTTGTGATTCCCCATGACAGAGAGGCACTTCTGACGAATTTCTTTTCGGAGCTCCAAGATAGAGAAGAAGAGCTAGGCATATCCGACATCCAGCTTGGTCTTACAACTCTGGAAGAAGTTTTCTTGAATATTGCAAAGCAAGCAGAACTCGAAAATGCTGCAGCCGAAGGAAGCCTAGTGACCCTGTCCTTATCATCTGGAGAATCCGTGCAGATTCCTACAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCAGATAACCCCACTGGGTCTATGGTAGAAGTATACTGGGAGCAAGATGATACTGGTGCCCTATGTATTGCCGGCCACTCGCAGAAAGTTCCTGTTCCTCATAGCATTCAACTATCATCGTCTCCTACTGTAAGACAACGCAGAAATTTTCGTCGTTCAGGACCAGTTCATGGGGTTGTGATTGATCCAACTCAAGTTAGTTCACTCAATTTTCAGTGA 2871 0.4309 MATTRGFTLVAQQYKALLKKNLLLSWRNKRATLLQLLSPLMFIFLIFAIDKAIKAQTSTSSAYKKVTNPPNQPSPPITPCESKYFIKLPCYDFVWSGDQNAKFHTIVDRIMNNNPGRPIPPSKVLSFGDKGEVDAWLLSNPMRVAGALHFVEKNDTVISYGIQTNSTTLPKRGKYEDPTASFQLPLQLAAEREIARYLIGDSNFSWNVFLREFAHPARIPFSAVGSIGPAFFLAIAMFNFVLQISSLVTEKELKLRQAMTMMGLYDAAYWLSWLTWETVVTIISSLLIVLFGMMFQFSFFLKNSFAILFLLFFLFELNMTGLAFMLSAFIRKSSSATTVGFSIFIVGFVTQLVVQAGFPYSDSISKTFRNVWSLFPPNPFAQALQVLSDAVATPEDDGISWSKRGECAANDDNCVITINDIYIWLVVTFFLWFVLAIYFDNIIPNASGVRKSIIYFLNPSYWMGKGGQKVKAPRHEQITPDDEDVLEEENKVKQQLTEGVVDANVAVQIHGLAKTYPGTLNIGCCCKCKRSTPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGITPVTNGDALIYGHSIRSSTGMSNIRKLIGVCPQFDILWDALSGQEHLQLFATIKGLSPASIKSITQTSLAEVRLTDAAKVRAGSYSGGMKRRLSVAIALIGDPKLVILDEPTTGMDPITRRHVWDIIENAKRGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFGTGFIANISFYGNNNERSPGNGDAISTEHRETVKKFFKNRLDVVPKEENNNFLTFVIPHDREALLTNFFSELQDREEELGISDIQLGLTTLEEVFLNIAKQAELENAAAEGSLVTLSLSSGESVQIPTGARFVGIPGTESADNPTGSMVEVYWEQDDTGALCIAGHSQKVPVPHSIQLSSSPTVRQRRNFRRSGPVHGVVIDPTQVSSLNFQ* 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0897 956 PANTHER ABC TRANSPORTER A FAMILY MEMBER 1-RELATED 7 923 - -
Apr1g0897 956 SMART AAA_5 546 730 IPR003593 -
Apr1g0897 956 CDD ABC_subfamily_A 507 741 - -
Apr1g0897 956 Gene3D - 497 753 IPR027417 -
Apr1g0897 956 Pfam ABC-2 family transporter protein 31 438 - -
Apr1g0897 956 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 507 753 IPR003439 GO:0005524
Apr1g0897 956 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 7 923 IPR026082 GO:0016021|GO:0055085|GO:0140359
Apr1g0897 956 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 534 735 IPR027417 -
Apr1g0897 956 Pfam ABC transporter 540 682 IPR003439 GO:0005524
Apr1g0897 956 ProSitePatterns ABC transporters family signature. 655 669 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0897 Apr-Chr1 12115239 12127804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0897 551 752 Calmodulin-binding Proteins AT2G36910 23.585 3.60e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0897 - - gmx:100786538 1659.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0897 1 12115239 12127804 Apr1g0897 1 12115239 12127804 ECH