Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0896 ATGGGGAAATCACCAGGAAAATGGATCAAAACTGTACTATTTGGGAAAAAGTCGTCTAAATCAAATATTTCAAAAGGAAGAGAGAAGCTTGTTAATAGAAAAAAAGAAGTGATCACTTCCAACGTGTTGGAAAATGATTTGGATTTAGATCCAAACCCCAATAAGATTGACAGAAATGAGGAGGACCTTGAACTAGAGAATGAAGAATCAGAAAATATTTTACCGGGGAACCAAGAAAGAGACATCATAGGATCTGTTGACCAAGATGCACCACCTGATCCAGAGAAAATCCGGCAGAAGGAAGCAGCAACAAAGGCACAGGCTGCTTTTAGGGGTTATTTGGCGCGCAGGGCATTTAGGGCCCTAAAAGGCATAATAAGGTTGCAAGCACTTATTCGTGGGCACTTGGTTAGGAGACAAGCTGTTGTTACACTATGCTGTATGTATGGGATTGTAAAGTTACAAGCACTTGTTCGTGGAGGAAGGGTTAGGCAGTCTGATGTTGGATTTGAATTCTGTGACAAGCGCAATCTACTTAAGTCTCTGGATGGCAAATTTGGTGAGCCAGTTGGAATTTCCACAAAAATTTCAAGGCTTTCAGCAAATAGGTTCATCTGTAAGCTTCTTGCTTCATCAACTACAATAACGGCCCTGCACCTGCAATATTTAAGTGGAGATCCAAATTCACTCTTTAGCTGGTTAGAGCGCTGGTCAGCATCTTACTTTTGGAAACCGGTTCCCCAACCCAAGAAAATTCGAGACTCTAAATCTCAGAGAAAGCAGGGCAACATTTCAAATGGAGAAGCTCAAATTAGCAAGTCGAGACGTACAAACAGGAAGCTTCCTATTGCAAATTTTGAATCAGTCCCAGTTCAAACAAATCCTGAATTTGAGAAACCAAAACGTAACTTAAGGAAAATCTCAAACCAACTGTCAGATCCAGAGCAAGAAAACCCACAAAGTGAGCTTGAAAAGGTTAAATGTAACTTGAGAAAGATTCATAACCCTGTTGTTGAGAATGCTATTCTGTCAGAAGTTGGATGTGAGACCCCAAAGCAGCATTTGGAAAAGGCAACAGTTATTGCAGATCATGCTGTTTCAGAACAAGGGATCATCACTTCTGATGAAAAGGTCAAGAAGGAAGCAACTTCAACCATTTCCAATGTACCTGATGTAGAAATTATGCCAAGACCAACAGTTAACATGGAGGTGTCAGACATTCCAAGCAGTTATCAAGTGTCTGTGGACTCAAAACCCTTGGCAGAGACTATAATTAAAGATAGAAACACTTCTGATGAAGTTAACAAGGAACTGAGCAATCTACCTGACGCTATTTTTAAAGATGAAAATTATCCATTAACAAATGGAGATTTGATTCATAAAGGAGAACTACCAGGTAATGAAAAGCAGAAACCCACCCGGAAAGCCTCAAATTTGGCTAAGCAGGAGAATGCAGAAAATGGTTTAAAGAATAGTCCAAAATTACCAAGTTATATGGCAGCAACTGAATCTGCAAAGGCAAAGTTGAGGACACAAGCGTTCCCAAGGTTTGGACAAGATGGAATTGACGTAAACAATACTGCTGAGCGACATTCTCTGTCGTCTTCAACTAACAACAAGATTAGTTCACAATCACCTAGGACACACAAATCAGTTCAAGCAGGTGGTAAAGGGGGCCACAGAAGTGACAGAACTACACCATCTTCTAGAGGTGGGAATGGGAAGGTAATTCAAGCAGAGTGGAGGAGGTGA 1752 0.407 MGKSPGKWIKTVLFGKKSSKSNISKGREKLVNRKKEVITSNVLENDLDLDPNPNKIDRNEEDLELENEESENILPGNQERDIIGSVDQDAPPDPEKIRQKEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVVTLCCMYGIVKLQALVRGGRVRQSDVGFEFCDKRNLLKSLDGKFGEPVGISTKISRLSANRFICKLLASSTTITALHLQYLSGDPNSLFSWLERWSASYFWKPVPQPKKIRDSKSQRKQGNISNGEAQISKSRRTNRKLPIANFESVPVQTNPEFEKPKRNLRKISNQLSDPEQENPQSELEKVKCNLRKIHNPVVENAILSEVGCETPKQHLEKATVIADHAVSEQGIITSDEKVKKEATSTISNVPDVEIMPRPTVNMEVSDIPSSYQVSVDSKPLAETIIKDRNTSDEVNKELSNLPDAIFKDENYPLTNGDLIHKGELPGNEKQKPTRKASNLAKQENAENGLKNSPKLPSYMAATESAKAKLRTQAFPRFGQDGIDVNNTAERHSLSSSTNNKISSQSPRTHKSVQAGGKGGHRSDRTTPSSRGGNGKVIQAEWRR* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0896 583 MobiDBLite consensus disorder prediction 248 303 - -
Apr1g0896 583 PANTHER PROTEIN IQ-DOMAIN 31 1 571 - -
Apr1g0896 583 PANTHER IQ-DOMAIN 5-RELATED 1 571 - -
Apr1g0896 583 MobiDBLite consensus disorder prediction 462 476 - -
Apr1g0896 583 Gene3D - 96 146 - -
Apr1g0896 583 MobiDBLite consensus disorder prediction 525 551 - -
Apr1g0896 583 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Apr1g0896 583 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Apr1g0896 583 Pfam Protein of unknown function (DUF4005) 482 562 IPR025064 -
Apr1g0896 583 MobiDBLite consensus disorder prediction 477 491 - -
Apr1g0896 583 MobiDBLite consensus disorder prediction 456 583 - -
Apr1g0896 583 MobiDBLite consensus disorder prediction 259 292 - -
Apr1g0896 583 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Apr1g0896 583 SMART iq_5 121 142 IPR000048 GO:0005515
Apr1g0896 583 SMART iq_5 98 120 IPR000048 GO:0005515
Apr1g0896 583 MobiDBLite consensus disorder prediction 44 94 - -
Apr1g0896 583 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0896 Apr-Chr1 12110853 12118354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0896 1 583 IQD Protein Family AT1G74690 43.678 9.56e-117 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0896 - - gmx:100786022 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0896 1 12110853 12118354 Apr9g3019 9 37036015 37043413 ECH
Apr7g1498 7 22156717 22162352 Apr1g0896 1 12110853 12118354 ECH
Apr3g0889 3 23031156 23040790 Apr1g0896 1 12110853 12118354 ECH
Apr1g0896 1 12110853 12118354 Apr1g0896 1 12110853 12118354 ECH