Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0892 ATGAAGTTTGGTTCCCAAAAATCTGCTCTTGAAGTTGAAGGAGTCAAGCACGAGAAGAGAAGTGAATCTAGTGTTGGTGATGAAGATGATCTTCGTGAACCAAAGATCGTTGTCCAGGTGCCAGACATGACTACCCTCGAAAAATCCGCCGTGGCAGCCAGGCCAAAGGCATCCCCAACCGGAAAGGAAGAGGTTGATGAACTTGAAAATGCGAAAGCCGAAATGGGTGAAGTCATAGAGGAAAATCAACGGTTAAAGATGAGTTTGAGCCGAATACTAAATGATTACCGTACACTGCAAATGCAATTCGATTACATAGTTGAACAAGAGACAAAAGATTCTTCTGATAAACAGAAGAATAAACATCATGAAAAAATAGAGGAATCAGAGTTAGTTTCCCTCAGTCTTGGAATGCTTCCAAGTAATCAAAGAAACAACGAAAAAGCTAAAGTCTGTGAACCATTGAAAGAGGAATTAGAAGACAAAGAAGGCTTAGCTCTTGGACTGGAGTGCAAATTTGAAACATCAAAATCTGGAAGCACAACTGAAAATTTACCAAATTCAAGTCCTGCCAATAGTGGTGAAGTACCAAAGGAAGAAGCAGCTGGGGAGAGTTGGCCAGCCAGTAAGGGACACAAGACAACTAGAGATGCTATAGAAGATGAAGTTTCCCAACAAAATTCTGCAAAGAAAGCAAGAGTTTGTGTGAGAGCAAGATGTGACACCCCAACTTTGAACGATGGATGTCAATGGAGGAAATATGGACAAAAGATTTCAAAGGGTAATCCTTGCCCTCGAGCTTACTACCGTTGCACAGTTGCACCATCATGCCCCGTAAGAAAGCAGGTGCAAAGATGTGCTCAAGACATGTCCATATTAATAACAACCTATGAAGGGACTCACAACCACCCTCTTCCACTTTCAGCCACTGCCATGGCTTCCACCACTTCTGCAGCTGCTTCCATGCTACTGTCTGGATCATCAACCTCACATTCTGGATCAATCCCATCAACAAGCATGACAACCACTACTGCGAATCTTCATGGAATGAACTTTTACCTATCAGATAACTCCAAATCAAAGCAATTCTACCTATCCCACCCTACACTCTCATCTTCATCACCTTCACACCCAACCATCACTCTAGATCTCACTTCCAACCCTCCCTCTTCCTCAACACCTTTTGGAAGATCATTGAACTACAACTCCCAAAGGTACCCTTCTTCCACAAGTCTAAACTTCAGTTCCTCAGAATCCAATGCAACATCTTGGAGCCTCAGCTACAACAATCAACCTTACAACAACAGGAACATCCTTAGTAACTTAAACCTTGCAAGACAACCAATGGAAAACATCTACAATTCCTACATGCAAAGGAACAACAATCCAATCCCTGCCCAACATTCTCTACCAGATACCATAGCTGCAGCAACAAAAGTAATCACATCAGATCCCACGTTTCAATCAGCTTTGGCAGCAGCTCTTACTTCAATTATTGGCAATGGAAGCACTCAAGGAAACCATAGTGTTGGAGAAATTTTGAGTCAGAAAATGAAATGGGGTGATCAATTGTTTCCATCTTCTGCTTTACCTTCATCTTCTAAAGTCAATAGCTGTGCATCAGGTTTCTTGAGCAAAGCACCTTCTAATGCACAAACAGGAAGTTTGATGTTTCTTCAACCATTTTCCGACCCCAAAAGTGCATCTGGGTCTCCTGGTGATAACAGAGACGACAACAATTAA 1743 0.4217 MKFGSQKSALEVEGVKHEKRSESSVGDEDDLREPKIVVQVPDMTTLEKSAVAARPKASPTGKEEVDELENAKAEMGEVIEENQRLKMSLSRILNDYRTLQMQFDYIVEQETKDSSDKQKNKHHEKIEESELVSLSLGMLPSNQRNNEKAKVCEPLKEELEDKEGLALGLECKFETSKSGSTTENLPNSSPANSGEVPKEEAAGESWPASKGHKTTRDAIEDEVSQQNSAKKARVCVRARCDTPTLNDGCQWRKYGQKISKGNPCPRAYYRCTVAPSCPVRKQVQRCAQDMSILITTYEGTHNHPLPLSATAMASTTSAAASMLLSGSSTSHSGSIPSTSMTTTTANLHGMNFYLSDNSKSKQFYLSHPTLSSSSPSHPTITLDLTSNPPSSSTPFGRSLNYNSQRYPSSTSLNFSSSESNATSWSLSYNNQPYNNRNILSNLNLARQPMENIYNSYMQRNNNPIPAQHSLPDTIAAATKVITSDPTFQSALAAALTSIIGNGSTQGNHSVGEILSQKMKWGDQLFPSSALPSSSKVNSCASGFLSKAPSNAQTGSLMFLQPFSDPKSASGSPGDNRDDNN* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0892 580 MobiDBLite consensus disorder prediction 11 36 - -
Apr1g0892 580 SUPERFAMILY WRKY DNA-binding domain 238 306 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0892 580 SMART WRKY_cls 245 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0892 580 ProSiteProfiles WRKY domain profile. 240 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0892 580 Coils Coil 65 88 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 210 226 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 110 130 - -
Apr1g0892 580 Pfam WRKY DNA -binding domain 246 304 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0892 580 MobiDBLite consensus disorder prediction 555 580 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 110 148 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 1 68 - -
Apr1g0892 580 Gene3D WRKY domain 229 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0892 580 MobiDBLite consensus disorder prediction 365 402 - -
Apr1g0892 580 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 51 576 IPR044810 GO:0003700
Apr1g0892 580 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 51 576 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 176 226 - -
Apr1g0892 580 MobiDBLite consensus disorder prediction 176 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0892 Apr-Chr1 12011602 12017680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0892 75 505 WRKY Transcription Factor Family AT5G15130 43.892 1.23e-81 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g0892 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0892 - - gmx:100804403 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0892 1 12011602 12017680 Apr9g3022 9 37059523 37063938 ECH
Apr7g1454 7 21671827 21673957 Apr1g0892 1 12011602 12017680 ECH
Apr3g0885 3 22968327 22971210 Apr1g0892 1 12011602 12017680 ECH
Apr1g0892 1 12011602 12017680 Apr1g0892 1 12011602 12017680 ECH