Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0891 ATGGAAGCTAACAAGTTCAGTTTGCTCTTTTTTTATATATTTTATTTTGCCATATTCCCTACCCTTAAGGCCAACATAGGCCACTTCGACAAAGTGTGGTATAAGCGATCTCAGGAAGCGAAGAAGACCGCTCAACATGCTTTCAAGTCTAACCCTGAGAAAGTTACGGTTGATTTTAATATGCACGTCAGCAATGCTCTGAAAGGCACCAACAACACAAGAAGGGGCTTAGCGAAATACAATGGTCCATGCAAGGTCACAAACCCCATTGACGGATGCTGGAGATGCGATCCAAATTGGGCAAACAATCGCAAGAAGCTAGCAAGTTGCGCCATTGGGTTTGGCCACGGCACAACCGGAGGCAAAGATGGCAAATTCTATGTGGTTACGGACCCATCTGACAATGACCTCGTGAACCCAAAACGTGGGACCTTAAGACATGCTGCGATTCAAGAAGAGCCATTGTGGATCATTTTTGCACGAAGCATGAACATTAAACTCAACGGGGAACTTCTATTGACGGATAACAAGACCATAGATGCACGTGGTGCCAATGTTCACATTAGCAATGGTGCCCAAATCACATTGCAATTTGTGAAAAATATTATAATTCATGGGTTACACATCCATGACATTAAGAAAGGTGGTGGTGGCCTCATTAGAGACTCCGTGAAACACTTTGGATTACGCACCGTGAGTGACGGTGATGGGATTTCCTTGTTTGGAGCCACACATGTTTGGTTAGATCATCTTTCTATGACGCATTGTGATGATGGCCTAATTGACGTCATCATGGGATCAACAGCTATTACCATCTCCAATAGCCATTTTACCAATCACAACGATGTAATCGTTTCTACTTTCTACTTCGTTATGTTATTTGGTGCCAATGATGGCTTCTCGGGTGATAAAGTTATGCAAGTGACTCTAGCTTTCAACCATTTTGGGAAAGGGTTGGTTCAGAGGATGCCAAGGTGCAGATGGGGCTTCTTTCATATTGTTAATAATGACTACACTCATTGGCTCATGTATGCCATTGGTGGTAGCCAACAACCCACTATCATAAGCCAGGGAAACCGATTTGTTGCACCTCAAAACCCAGCAGCAAAAGAAGTGACAAAAAGGGACCGTGCACCTGAAAGTGTGTGGAAGACATGGAATTGGAGATCAGAGGGTGATTTAATGATGAATGGAGCCTTCTTTATTCAGTCTGGGAAAAAGGTTGCAAACCTTCCCAAGATAGGCATCCAAGCAAAGCCTGCTAAATTTGTATCCAGTCTCACTCGCTTTGCAGGTTCTCTAAAATGTGAAGTAAAGAAGCCATGTTAA 1329 0.4334 MEANKFSLLFFYIFYFAIFPTLKANIGHFDKVWYKRSQEAKKTAQHAFKSNPEKVTVDFNMHVSNALKGTNNTRRGLAKYNGPCKVTNPIDGCWRCDPNWANNRKKLASCAIGFGHGTTGGKDGKFYVVTDPSDNDLVNPKRGTLRHAAIQEEPLWIIFARSMNIKLNGELLLTDNKTIDARGANVHISNGAQITLQFVKNIIIHGLHIHDIKKGGGGLIRDSVKHFGLRTVSDGDGISLFGATHVWLDHLSMTHCDDGLIDVIMGSTAITISNSHFTNHNDVIVSTFYFVMLFGANDGFSGDKVMQVTLAFNHFGKGLVQRMPRCRWGFFHIVNNDYTHWLMYAIGGSQQPTIISQGNRFVAPQNPAAKEVTKRDRAPESVWKTWNWRSEGDLMMNGAFFIQSGKKVANLPKIGIQAKPAKFVSSLTRFAGSLKCEVKKPC* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0891 442 SUPERFAMILY Pectin lyase-like 88 432 IPR011050 -
Apr1g0891 442 Pfam Pectate lyase 176 361 IPR002022 -
Apr1g0891 442 PANTHER PECTATE LYASE 18-RELATED 6 442 IPR045032 GO:0030570
Apr1g0891 442 SMART amb_all 162 367 IPR002022 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Apr1g0891 442 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Apr1g0891 442 Gene3D - 87 435 IPR012334 -
Apr1g0891 442 PANTHER PECTATE LYASE 6 442 - -
Apr1g0891 442 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0891 Apr-Chr1 11975435 11978033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0891 1 442 Polysaccharide Lyase AT5G15110 53.125 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0891 K01728 - gmx:100801864 693.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0179 6 1751575 1753861 Apr1g0891 1 11975435 11978033 ECH
Apr7g1451 7 21632980 21635041 Apr1g0891 1 11975435 11978033 ECH
Apr3g0880 3 22883094 22885605 Apr1g0891 1 11975435 11978033 ECH
Apr1g0891 1 11975435 11978033 Apr1g0891 1 11975435 11978033 ECH