Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0883 ATGGGGATGGATTACTACAACATACTCAAAGTGAATCGAAACGCCAGCGACGATGATTTGAAAAAAGCCTACAAGAGACTCGCTCGTATTTGGCACCCCGACAAAAACCCCGTTAACAAGACCGAAGCTGAAGCCAAATTCAAACGAATATCCGAAGCCTACGACGTTTTGAGCGATCCGCAGAAGCGTCAGATCTACGATCTCTACGGCGAGGAGGCACTTAAATCGGGTCAGTTCCCGCCACCTTCCCAATCCTCCTCTTCTTCGTCCTCTTCACGCGCTTTCCAGAACCACCATCACCGCCAGAACGCTACCACGTCGTTTCGCTTCAACCCCCGCGACGCCGACGACATTTACGCCGAATTTTTTGGCGCGGATGCTGCCGACGTCGGCGCTGGCGCCTCTTCCCGCCGTGACGGCTTCTTCCGTACCTCGAATGGCGCCGCGTTTGGCGCCACGGGAAGGAAGGCTGCCGCGGTGGAGAACGCGCTTCCCTGTAGCTTGGAAGAGCTTTACAAAGGCGTCAAGAAGAAAATGAAGATCTCCAGGAACGTCTACGATGCTTTCGGCAAAGGTCGGAATGTGGAGGAGATTTTGACTATTGAGATAAAACCGGGCTGGAAGAAAGGAACCAAGATTACCTTTCCAGAGAAGGGTAACCAGGAGCCCGGTGTCATCCCAGCTGATCTTATTTTTGTGATAGATGAGAAACCACATGCTCTGTATAGAAGGGATGGTAATGATCTGGTGATCAACCAGGAGATAACCCTTCTTGAGGCCCTTACAGGTAAAACATTGGATCTCACCACCTTGGATGGAAGGAGTCTCATGATCCCATTGACAGATATTGTCAAACCTGGTGCCGAGGTTGTTGTCGCTAATGAAGGAATGCCCATATCAAAAGAGCCTGGAAGGAAGGGGAATTTGAGAATTAGGCTTGATGTTAAGTATCCCTCAAGGCTAACACCTGAACAGAAGTCTGATCTGAGGAGAGTTTTAGGTGGCATCTCATAA 1014 0.503 MGMDYYNILKVNRNASDDDLKKAYKRLARIWHPDKNPVNKTEAEAKFKRISEAYDVLSDPQKRQIYDLYGEEALKSGQFPPPSQSSSSSSSSRAFQNHHHRQNATTSFRFNPRDADDIYAEFFGADAADVGAGASSRRDGFFRTSNGAAFGATGRKAAAVENALPCSLEELYKGVKKKMKISRNVYDAFGKGRNVEEILTIEIKPGWKKGTKITFPEKGNQEPGVIPADLIFVIDEKPHALYRRDGNDLVINQEITLLEALTGKTLDLTTLDGRSLMIPLTDIVKPGAEVVVANEGMPISKEPGRKGNLRIRLDVKYPSRLTPEQKSDLRRVLGGIS* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0883 337 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 336 - -
Apr1g0883 337 CDD DnaJ_C 164 321 - -
Apr1g0883 337 CDD DnaJ 4 59 IPR001623 -
Apr1g0883 337 Gene3D - 239 319 - -
Apr1g0883 337 Pfam DnaJ C terminal domain 161 318 IPR002939 -
Apr1g0883 337 PANTHER BNAA06G20720D PROTEIN 2 336 - -
Apr1g0883 337 Pfam DnaJ domain 4 67 IPR001623 -
Apr1g0883 337 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Apr1g0883 337 Gene3D - 158 237 - -
Apr1g0883 337 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Apr1g0883 337 MobiDBLite consensus disorder prediction 75 109 - -
Apr1g0883 337 MobiDBLite consensus disorder prediction 78 109 - -
Apr1g0883 337 SUPERFAMILY Chaperone J-domain 3 88 IPR036869 -
Apr1g0883 337 PRINTS DnaJ domain signature 6 24 IPR001623 -
Apr1g0883 337 PRINTS DnaJ domain signature 24 39 IPR001623 -
Apr1g0883 337 PRINTS DnaJ domain signature 42 62 IPR001623 -
Apr1g0883 337 PRINTS DnaJ domain signature 62 81 IPR001623 -
Apr1g0883 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 242 327 IPR008971 GO:0006457|GO:0051082
Apr1g0883 337 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 239 IPR008971 GO:0006457|GO:0051082
Apr1g0883 337 SMART dnaj_3 3 62 IPR001623 -
Apr1g0883 337 Gene3D DnaJ domain 2 133 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0883 Apr-Chr1 11844209 11849335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0883 5 74 C2H2 Transcription Factor Family AT1G74250 36.486 7.03e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0883 K09510 - gmx:100781572 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0883 1 11844209 11849335 Apr1g0883 1 11844209 11849335 ECH