Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0882 ATGGGAAATTGCAACGCGTGTACAAGAGCTGATGTCGTGGAAGATTATAATAACAACAACTCCAACGACACGAACCGCGGTCGGAAGAAAGAACCGAACCCAAAAAAACCGAACCCATACGCGACTGAACCGGTCCGGTCGAGCGGGTCGGCGGCGCCGATCCGCGTCCTGAAGGACGTGATTCCAATGAGCCACCGAACACGAATAAGTGACAAGTACATATTGGGCCGAGAATTGGGCCGTGGCGAGTTCGGCATCACTTACCTGTGTACGGACCGTGAGACGAAGGAGGCTTTAGCGTGCAAATCGATCTCGAAGAGAAAACTTCGGACTCCGGTGGACATCGACGACGTGAGGCGCGAAGTGGCCATCATGTCCACGCTTCCCGACCACCCTAACATCGTGAAGTTGAAGGCAACCTACGAAGACAACGAGAACGTGCACCTCGTCATGGAGCTCTGCGAAGGCGGCGAGCTTTTCGACCGGATTGTGGCCAGAGGTCACTACAGCGAGCGCGCCGCCGCCAACGTGGCTCGCACCATCGCCGAGGTTGTCAGAATGTGCCACGTCAATGGCGTCATGCATAGGGACCTGAAGCCGGAGAATTTCCTCTTCGCTAATAAGAAAGAGAATTCCCCTCTTAAGGCCATTGATTTCGGCCTCTCCGTGTTTTTCAAGCCTGGAGAGAAGTTTAGGGAGATTGTTGGGAGTCCTTACTATATGGCGCCGGAGGTTTTGAAGAGGAATTATGGACCGGAGGTGGACGTGTGGAGTGCTGGGGTCATTCTTTATATTTTGTTATGTGGGGTTCCTCCGTTTTGGGCAGAGACCGAACAAGGTGTCGCTTTGGCCATTCTGAGGGGTGTTATTGACTTCAAGAGGGAACCTTGGCCTCAAATATCGGATAGTGCTAAGAATCTCGTGCGCCGTATGTTGGAGCCTGATCCTAAAAAGCGCTTCACAGCTGAACAGGTGCTTGGGCATCCCTGGCTGCAAAATGCAAAGAAAGCTCCAAATGCTCCATTGGGAGATATTGTAAGGTCAAGGCTTAAGCAATTTTCTGTGATGAATAGATTCAAAAAGAAAGCTCTGCGGGTAATTGCAGAGCATTTATCTGTTGAAGAGGTGGAAATTATAAAAGATATGTTTACATTGATGGATACCGACAAAGATGGCAGGGTAACATATGAGGAACTCAGGGCTGGGCTGAGGAAGGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGATGCTGATGGAAGTGGCTGATGTTGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCTGTTACGATTCACTTGCAAAAAATGGAGAATGATGAGCATTTCCACAAAGCATTCAAGTTTTTTGACAAAGATGGGAGTGGGTATATTGAGTTAGGCGAGCTACAAGAAGCATTAGTAGATGAGTCCGGAGAAACTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGGATGGTCGCATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAATATTCAAGGGAGAGATTTAAGAGTTTGAGCCTAAATTTGATGAAGGATGGCTCACTTCAGCTTCACGATGGAATTAGTGGTGAAGCTGTAGTGGTTTGA 1668 0.485 MGNCNACTRADVVEDYNNNNSNDTNRGRKKEPNPKKPNPYATEPVRSSGSAAPIRVLKDVIPMSHRTRISDKYILGRELGRGEFGITYLCTDRETKEALACKSISKRKLRTPVDIDDVRREVAIMSTLPDHPNIVKLKATYEDNENVHLVMELCEGGELFDRIVARGHYSERAAANVARTIAEVVRMCHVNGVMHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGEKFREIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKNLVRRMLEPDPKKRFTAEQVLGHPWLQNAKKAPNAPLGDIVRSRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIKDMFTLMDTDKDGRVTYEELRAGLRKVGSQLAEPEIKMLMEVADVDGNGVLDYGEFVAVTIHLQKMENDEHFHKAFKFFDKDGSGYIELGELQEALVDESGETDADVLNDIMREVDTDKDGRISYEEFVAMMKTGTDWRKASRQYSRERFKSLSLNLMKDGSLQLHDGISGEAVVV* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0882 555 CDD EFh 450 512 IPR002048 GO:0005509
Apr1g0882 555 Gene3D Phosphorylase Kinase; domain 1 74 158 - -
Apr1g0882 555 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Apr1g0882 555 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Apr1g0882 555 Pfam Protein kinase domain 75 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0882 555 ProSitePatterns EF-hand calcium-binding domain. 495 507 IPR018247 -
Apr1g0882 555 SMART serkin_6 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0882 555 Gene3D Transferase(Phosphotransferase) domain 1 159 340 - -
Apr1g0882 555 ProSiteProfiles EF-hand calcium-binding domain profile. 410 445 IPR002048 GO:0005509
Apr1g0882 555 SUPERFAMILY Protein kinase-like (PK-like) 59 354 IPR011009 -
Apr1g0882 555 Gene3D - 341 515 - -
Apr1g0882 555 SMART efh_1 486 514 IPR002048 GO:0005509
Apr1g0882 555 SMART efh_1 378 406 IPR002048 GO:0005509
Apr1g0882 555 SMART efh_1 414 442 IPR002048 GO:0005509
Apr1g0882 555 SMART efh_1 450 478 IPR002048 GO:0005509
Apr1g0882 555 PANTHER BNAA09G44420D PROTEIN 15 531 - -
Apr1g0882 555 ProSiteProfiles Protein kinase domain profile. 73 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0882 555 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Apr1g0882 555 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Apr1g0882 555 SUPERFAMILY EF-hand 359 538 IPR011992 -
Apr1g0882 555 ProSitePatterns EF-hand calcium-binding domain. 423 435 IPR018247 -
Apr1g0882 555 MobiDBLite consensus disorder prediction 15 49 - -
Apr1g0882 555 ProSiteProfiles EF-hand calcium-binding domain profile. 482 517 IPR002048 GO:0005509
Apr1g0882 555 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 531 - -
Apr1g0882 555 ProSitePatterns EF-hand calcium-binding domain. 459 471 IPR018247 -
Apr1g0882 555 CDD STKc_CAMK 72 330 - -
Apr1g0882 555 Pfam EF-hand domain pair 379 438 IPR002048 GO:0005509
Apr1g0882 555 Pfam EF-hand domain pair 449 512 IPR002048 GO:0005509
Apr1g0882 555 ProSiteProfiles EF-hand calcium-binding domain profile. 446 481 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0882 Apr-Chr1 11836285 11841423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0882 1 555 EF-hand Containing Proteins AT1G18890 81.261 0.0 921
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Apr1g0882 Pkinase 1.1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0882 K13412 - gmx:100809838 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0882 1 11836285 11841423 Apr1g0882 1 11836285 11841423 ECH