Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0875 ATGGTGAGATCTCCATGCTATGAAAAATTCAATGCCAAAAGGGGTGTATGGACTCCAGAAGAAGATCCAAAAATGCTTTCATTTGTCTCCAAGCATGGATCTAGTAATTGGACTTCTGTCCCCATAAAAGCAGGGCTCAAGAGGTGTGGAAAGAGTTGCAGGATTAGGTGGAGTAATAACCTCAAGCTTGACCTTAAGCATGACAATTTCACAACCCAAGAAGAAGATCTAATCATTAAGCTTCACGCAGCCATAGGTAGCAGGTGGTCTATAATAGCCCAACAAATTCCTGGGAAAACAGACAATGATGTAAAGAACTATTGGAACACAAAGCTGAAAAAAAAACTGTCTCAAATGGGGATAGACCCTGTTACCCACAAGCCTTTCTCTAAACTCATTGCTGATTATGGAAACATAGGAGAGTGCCAGAAACCAAGTACCCGAATTGGGTCTGTCAATAAAGACTTCAAGAATGCAATGATCTTAAAATCAGAGCCACATCAAGCCTTGCCACAAGGATTTGGAAATTTCCTTGACCAACCAAAGCAACTATTAACATCACCTCCTAAAGAAGAAATCCTTGGAAGTAACTTTTTATTTAATAGAAATCATAATGATATTGATAACTTCCCAACTCAGCTTCCTCATCTCCAAGCCATACCAATAGTGACAAGTGCCTCAAATGGCATAGACTTTGAAAATGAGACCATCCTAACATCTTTATTAGGGGAAGGTTGCTTGTCAAAAACTTCATCACCATCTACTTCTACTTGTTTCACTTCAGGTCAAGAAGAATTACCTGTGCCCTTTAGTTGGAATGATTTTCTTCTAGAAGATGCTTTTATACCACCTAGTGATAACCAAGAAGAAGAAATGGTGAGTCAAGTGGAGAATGTGATGAGACAAAGTTGGAATATGAAAGAGGTCCTGTCACAACAAGCCTCTACCAGTGATGTCCATTTTTCATCATCCTCTAATATTTCATTCGTAGAAGCCATGCTTGATCAAGAAAATGAGATGTTTTTAAGTTTTCCTCACCTCATGGAAGAACCATCTAATTATTAA 1065 0.3869 MVRSPCYEKFNAKRGVWTPEEDPKMLSFVSKHGSSNWTSVPIKAGLKRCGKSCRIRWSNNLKLDLKHDNFTTQEEDLIIKLHAAIGSRWSIIAQQIPGKTDNDVKNYWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGECQKPSTRIGSVNKDFKNAMILKSEPHQALPQGFGNFLDQPKQLLTSPPKEEILGSNFLFNRNHNDIDNFPTQLPHLQAIPIVTSASNGIDFENETILTSLLGEGCLSKTSSPSTSTCFTSGQEELPVPFSWNDFLLEDAFIPPSDNQEEEMVSQVENVMRQSWNMKEVLSQQASTSDVHFSSSSNISFVEAMLDQENEMFLSFPHLMEEPSNY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0875 354 PANTHER F14D16.11-RELATED 1 352 - -
Apr1g0875 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr1g0875 354 CDD SANT 69 112 IPR001005 -
Apr1g0875 354 Gene3D - 68 128 - -
Apr1g0875 354 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Apr1g0875 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr1g0875 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr1g0875 354 CDD SANT 17 61 IPR001005 -
Apr1g0875 354 Gene3D - 7 67 - -
Apr1g0875 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr1g0875 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr1g0875 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g0875 354 SMART sant 66 114 IPR001005 -
Apr1g0875 354 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0875 Apr-Chr1 11689390 11691091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0875 1 135 MYB Transcription Factor Family AT5G56110 65.185 1.08e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0875 Myb_DNA-binding 3.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0875 K09422 - gmx:100795381 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0875 1 11689390 11691091 Apr1g0875 1 11689390 11691091 ECH