Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0872 ATGGACCCTCCTCTCATCAACGATTCCACATTCTCCCCCGCTTATTCTCTCGCCGAGATTTGGCCATTCTCTTCCTCTGCAGAACCACAAATGCCTATTCCCTTTCCCCATCTCCCAGATGCCTCCGCCGAGGACTCCACCGTCACCGACCACAGCGCCACCGCACCAAATCACTCCAAGAGGAAGCGCCTCTCCTCCGATGAACACTGCTCCAAGATTCTCTCCACTACCACCACTGCTAATGACTTGAATGATTCTGGCGATAAACGGATGAAATTAGGAGGGTCAAGTGTTGAAAATGATAGTTTGAAAGCTGAGGCAGAAGCTAGTTCAACGGCTGCTATCAAATCAGTTGAACAAAGCACTAAACCTTCAGAGCCACCTAAGCAAGACTATATTCATGTGAGAGCAAGAAGGGGTCAAGCTACCGATAGCCACAGTCTAGCAGAGAGAGCAAGAAGAGAAAAGATCAGTGAGAGGATGAAAATTCTTCAGGACTTGGTCCCGGGGTGCAACAAGGTAATCGGTAAAGCGCTTGTCTTGGATGAGATAATCAATTACATACAGTCGTTGCAGCGTCAGGTTGAGTTCCTTTCAATGAAGCTTGAAGCAGTTAATTCAAGAGTGAACATGAGCCATACTATTGACGGGTTTCCTTCAAAAGATGTTGGTGCTCAGCCATTTGACGTTGCTGGGATGATATTTGGATCACAGGCAGCAAGGGGGTATGCTCATGGATCACATCCTGGATGGCTGCATATGCAGCTAGGTGGTGGTTTTGATAGAACATAA 792 0.4747 MDPPLINDSTFSPAYSLAEIWPFSSSAEPQMPIPFPHLPDASAEDSTVTDHSATAPNHSKRKRLSSDEHCSKILSTTTTANDLNDSGDKRMKLGGSSVENDSLKAEAEASSTAAIKSVEQSTKPSEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVNMSHTIDGFPSKDVGAQPFDVAGMIFGSQAARGYAHGSHPGWLHMQLGGGFDRT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0872 263 CDD bHLH_AtBPE_like 131 210 - -
Apr1g0872 263 PANTHER BNAC05G07950D PROTEIN 1 263 - -
Apr1g0872 263 MobiDBLite consensus disorder prediction 26 130 - -
Apr1g0872 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 211 IPR036638 GO:0046983
Apr1g0872 263 Gene3D - 138 216 IPR036638 GO:0046983
Apr1g0872 263 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 263 IPR024097 GO:0006355
Apr1g0872 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 141 191 IPR011598 GO:0046983
Apr1g0872 263 Coils Coil 188 208 - -
Apr1g0872 263 SMART finulus 147 197 IPR011598 GO:0046983
Apr1g0872 263 MobiDBLite consensus disorder prediction 103 127 - -
Apr1g0872 263 MobiDBLite consensus disorder prediction 55 69 - -
Apr1g0872 263 Pfam Helix-loop-helix DNA-binding domain 145 192 IPR011598 GO:0046983
Apr1g0872 263 MobiDBLite consensus disorder prediction 70 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0872 Apr-Chr1 11650457 11654089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0872 1 263 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G62610 52.817 2.40e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0872 HLH 2.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0872 - - gmx:100777819 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0872 1 11650457 11654089 Apr9g3051 9 37304230 37307831 ECH
Apr1g0872 1 11650457 11654089 Apr1g0872 1 11650457 11654089 ECH