Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0869 ATGCCTCTCTCTTCTTCCGCCGTGTCCAGCGACGCTGCCGGCGAGATCATGCTCTTCGGTGTGAGAGTCGTGGTGAACTCGATGAGGAAGAGCGTGAGCATGAACAACCTCTCGCAGTACGAGTTCCCTCGCGACGCCTCCAATAACAACAAAGAAGATGCCATCGCCGCCGGCTACGCCTCCGCTGATGACGCCGCTCCAAACAACTCCGGCAAGCAGCGCGACCGCGAGCGCAAGCGAGGGATTCCATGGACAGAGGAAGAGCACAAGCTATTCTTGGTGGGGTTGCAGAAAGTGGGGAAAGGTGATTGGAGAGGGATCTCAAGGAACTATGTCAAATCTCGGACGCCAACGCAGGTTGCAAGCCATGCTCAGAAATATTTTCTCCGCCGCAGCAACCTTAATCGCCGTCGCCGTAGATCCAGTCTCTTTGACATCACCACAGACACAGTCTCAACAATCCCGATGGAGGAAGAGCAGATCCAGCATCAAGATGATGTGTCTCGCTCGCACCCCATGTCCCCTGCAACCCCTGAAAGTAGCAACATGAACGGACTTCCAATGATACCCATGTATCTGAAGGATGTTAGTTCTGGAGTCATGTCAGTTCAAGCTGGGAATCCAACGGAAACACTCGCTTTAGGACAAGCAAATGTGGAACAGAATGGCCCAACCAAGCAAGGCTGTACCATTCCTGTTGTTCCAGATCATGAAGGTTCCACGGTGTCCGATATCACTGTCAGTTTGAGTTCAGCAGTTGATCCTCCAACACTGTCTCTTGGGCTATCCTTGTCATCTAGTCAAAGACAGATATCATCAAGGCATTCAGCTGTAAATGGATTGCCATGCTTCAACAATGGAGATAGCATCATAAGCGTTGCTTGA 885 0.5153 MPLSSSAVSSDAAGEIMLFGVRVVVNSMRKSVSMNNLSQYEFPRDASNNNKEDAIAAGYASADDAAPNNSGKQRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKSRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSTIPMEEEQIQHQDDVSRSHPMSPATPESSNMNGLPMIPMYLKDVSSGVMSVQAGNPTETLALGQANVEQNGPTKQGCTIPVVPDHEGSTVSDITVSLSSAVDPPTLSLGLSLSSSQRQISSRHSAVNGLPCFNNGDSIISVA* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0869 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 132 IPR017930 -
Apr1g0869 294 Pfam Myb-like DNA-binding domain 83 128 IPR001005 -
Apr1g0869 294 CDD SANT 83 128 IPR001005 -
Apr1g0869 294 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 13 294 - -
Apr1g0869 294 SUPERFAMILY Homeodomain-like 78 133 IPR009057 -
Apr1g0869 294 PANTHER KIN2 13 294 - -
Apr1g0869 294 ProSiteProfiles SANT domain profile. 84 132 IPR017884 -
Apr1g0869 294 ProSiteProfiles Myb-like domain profile. 76 128 IPR001005 -
Apr1g0869 294 Gene3D - 82 134 - -
Apr1g0869 294 MobiDBLite consensus disorder prediction 167 184 - -
Apr1g0869 294 SMART sant 80 130 IPR001005 -
Apr1g0869 294 MobiDBLite consensus disorder prediction 159 186 - -
Apr1g0869 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 79 130 IPR006447 GO:0003677
Apr1g0869 294 MobiDBLite consensus disorder prediction 59 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0869 Apr-Chr1 11611592 11614381 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr1g0869 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0869 - - gmx:778057 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g3054 9 37336019 37338213 Apr1g0869 1 11611592 11614381 PCT