Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0857 ATGGCAATCTCAATACCTAGTAGACAGCTATTCATAGATGGAGAGTGGAGAGTGCCGGTTCTCAATAATCGTTTTCCAATCATCAACCCAGCCACTGAGGACATAATAGGGGATATCCCAGCTGCTACTAAGGAAGATGTTGACATTGCTGTGGAAGCTGCTAGAAAGGCCTTGTCTCGGAACAAGGGCAGGGATTGGTCTAAGGCTTCTGGTTCTGTTCGAGCTCGCTATCTTCGAGCCATTGCCTCTAAGATTACGGAGAAAAAGGATGAACTAGGAAAACTTGAAGCAATTGATTGTGGAAAACCACTGGATGAAGCATTGGCAGACCTGGATGATGTTATTGGTTGTTTTAACTACTATGCTGAGCTTGCCGAAGGGTTGGATGCAAAGCAAAAGGCTCCTGTATCTCTTCCTATGGAGACCTTCAAGAGTTATGTTCTCAAGGAGCCCATTGGGGTTGTTGCATTGATTACTCCATGGAACTATCCTCTCTTAATGGCTACGTGGAAAGTTGCTCCTGCTCTGGCTGCTGGTTGTACTGCAATATTGAAGCCATCTGAATTGGCATCTGTGACATGTTTGGAGCTGGGTGAAATATGCAGAGAAGTGGGCCTTCCTCCAGGTGTATTAAATATCGTCACTGGATTAGGCCAAGAAGCTGGTGCACCTTTGGCATCTCATCCTGCTGTAGACAAGATTGCCTTTACTGGAAGCTCTGTAACTGGAAGCAAGATTATGACAGCTGCAGCACAGATTGTCAAGCCTGTCTCACTAGAGCTTGGTGGAAAGAGCCCAATCATTGTTTTTGAGGATGTTGACCTTGATAAGACTGCTGAATGGACCATCTTTGGCTGCTTCTTTACAAATGGTCAAATTTGCAGTGCAACTTCTCGCCTTATTGTTCATGAAAGTATAGCAACAGAATTTGTGAATAGGCTTGTGCAATGGGCCAAAAACATAAAAATTTCAGATCCCTTGGAAGAAGGCTGCAGGCTAGGCCCTATTGTTGGTGAAGGACAGTATAAAAAGGTATTGAATTTGATCTCAACAGCTAAGAGTGAAGGTGCAACAATTTTGACTGGTGGATCTCGCCCAGAGCATTTAAAGAAGGGATACTTTGTTGAACCAACCATCATAACTGATGTGACTACCTCAATGCAAATTTGGAGAGAAGAAATTTTTGGACCTGTGCTCTCCGTGAAAACATTTAGTACTGAGGAAGAAGCTATTGAACTTGCAAATGACACACAATATGGCTTAGGGTCTGCTGTGATGTCAAAAGATCTAGAAAGATGTGAGCGCATATCTGAGGCTATTCAGGCTGGAATTGTATGGATCAATTGTGCTCAACCAAGCTTCATTCAAGCTCCATGGGGAGGCATTAAACGTAGTGGGTTTGGTCGTGAATTAGGAGAATGGGGCCTCGAGAACTACTTAAGTGTGAAGCAAGTGACTAAGTATATATCTGATGATCAGTGGGGCTGGTATCGGTCTCCTTCAAAGCTGTGA 1512 0.4392 MAISIPSRQLFIDGEWRVPVLNNRFPIINPATEDIIGDIPAATKEDVDIAVEAARKALSRNKGRDWSKASGSVRARYLRAIASKITEKKDELGKLEAIDCGKPLDEALADLDDVIGCFNYYAELAEGLDAKQKAPVSLPMETFKSYVLKEPIGVVALITPWNYPLLMATWKVAPALAAGCTAILKPSELASVTCLELGEICREVGLPPGVLNIVTGLGQEAGAPLASHPAVDKIAFTGSSVTGSKIMTAAAQIVKPVSLELGGKSPIIVFEDVDLDKTAEWTIFGCFFTNGQICSATSRLIVHESIATEFVNRLVQWAKNIKISDPLEEGCRLGPIVGEGQYKKVLNLISTAKSEGATILTGGSRPEHLKKGYFVEPTIITDVTTSMQIWREEIFGPVLSVKTFSTEEEAIELANDTQYGLGSAVMSKDLERCERISEAIQAGIVWINCAQPSFIQAPWGGIKRSGFGRELGEWGLENYLSVKQVTKYISDDQWGWYRSPSKL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0857 503 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Apr1g0857 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Apr1g0857 503 PANTHER NAD-DEPENDENT ALDEHYDE DEHYDROGENASE FAMILY PROTEIN 1 503 - -
Apr1g0857 503 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Apr1g0857 503 SUPERFAMILY ALDH-like 5 490 IPR016161 GO:0016491
Apr1g0857 503 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 503 - -
Apr1g0857 503 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Apr1g0857 503 CDD ALDH_F10_BADH 27 487 - -
Apr1g0857 503 Pfam Aldehyde dehydrogenase family 23 485 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0857 Apr-Chr1 11427189 11433451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0857 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 78.443 0.0 848
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0857 K00130 - gmx:100170755 952.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0857 1 11427189 11433451 Apr1g0857 1 11427189 11433451 ECH
Apr9g3065 9 37458174 37462579 Apr1g0857 1 11427189 11433451 PCT