Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0850 ATGGGTGGCAATGGCAAGCACAGGTGGAAAATATCCTTCCATCGTTCTTCTTCTTCCTCTCGTTCAAAGCTGGAACCTAAGCACCCTCCCAAGGAGTTCACGTGCCCGATTTCCGGGTCCTTAATGTCTGACCCGGTCGTTGTTGCTTCGGGTCAAACCTTCGAACGCATCGCCGTTCAAGTCTGTTCTGATTTAAAGTTCTCCCCCAAATTAGACGACGGGACCCGACCCGATTTCTCAACCGTCATCCCCAATTTGGCCATCAAAACGACCATCCTCAACTGGTGCGACAAATCCAGTACCGAACACCCGCGCGCACCGGATTACGCCTCTGTGGAGAGGCTCGTTCGAGAAGCAATGGGGGCGTCGGAGGAAGAACGAATTAGGGTTTCCGAGAAGGAGCTGCTGAAGGCGGTGGCCGATAACCCGCCGGTGATTTTCTCCCACGCCGCCACTGAGTTGGGGCCCCGAGTTAACCACTTCAACTCGGGATCCTCGGAGGAATCGGTGATAATTCCGACGAGTCCTGGGACGCCGTTGACGCTGACGTATCGCCCCACTTGTTTCTCCTCCTCCTCCTCCTCGTGCGAGATCGAAATCCAAAGCCCCAGCGCGCCGGCGTCGGAGGAAGAAGAGGGGTTATTGAAGAAATTGAGGAGCAGCGTGGTATTCGAGCAAGAAGAAGGTGTAATCGCTCTGAGAAGCATCACGAGGAATAGGGAAGAGGCTAGGGTTTTGCTGTGCACGCAGCTGTTGCTCTTGGCGCTACGTCCTTTGGTTGCTTCACGTTACGGCGTCGTTCAGGTGAACGCGGTGGCGTCTCTGGTCAACCTTTCCCTGGAGAAGCAGAACAAGGTGAAGATCGTGAGGTCAGGGTTTGTTCCCTCTCTAATCGATGTTTTGAAGGGGGGATTCGGTGAATCGCAGGAGCACGCTGCGGGCGCGCTCTTTAGTTTAGCATTGGACGATGACAACAAGATGGCGATTGGTGTACTCGGCGCGTTACAGCCACTCATGCACGCGCTCCGGTCAGAGTCGGAACGGACTCGGCATGACTCGGCGCTCGCTCTCTATCATCTGACCCTGGTTCAGAGCAATCGAGTCAAACTGGTGAAACTCGGGGTGGTCCCAGCGCTGCTTTCGATGGTTGTGGCAGGGAATTTGGCGAGCCGGGTGCTGCTGATTCTGTGCAACTTGGCCGTATCGATGGAGGGAAGGACGGCTATGTTAGATGCGAATGCAGTGGAGTGTTTGGTGGAATTGCTGAGGGGTAATGAGTTGGACTCGGAGGCGACTCGGGAGAATTGTGTGGCTGCTTTATATGCGTTGAGTCATAGAAGCTTGAGGTTCAAGGGATTGGCAAAAGAGGCGAGGGCTGTAGAAGTTTTGAAGGAGATTGAGGAGACAGGAACGGAGAGAGCCAAGGAGAAGGCCAGAAAGGTGTTGCAGATGATGAGGGCTGTGGGAGACGCTGATGGTGAAGAAGGTTTCGAGTTCGATGGCATTTTGGATTCCGGCGGGTTCGCTCGGAATCGATACCGTGTTGGTGGTGCCAGGAATAACAACCTCGTCAACTCAACTACATTTTAG 1590 0.5434 MGGNGKHRWKISFHRSSSSSRSKLEPKHPPKEFTCPISGSLMSDPVVVASGQTFERIAVQVCSDLKFSPKLDDGTRPDFSTVIPNLAIKTTILNWCDKSSTEHPRAPDYASVERLVREAMGASEEERIRVSEKELLKAVADNPPVIFSHAATELGPRVNHFNSGSSEESVIIPTSPGTPLTLTYRPTCFSSSSSSCEIEIQSPSAPASEEEEGLLKKLRSSVVFEQEEGVIALRSITRNREEARVLLCTQLLLLALRPLVASRYGVVQVNAVASLVNLSLEKQNKVKIVRSGFVPSLIDVLKGGFGESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLTLVQSNRVKLVKLGVVPALLSMVVAGNLASRVLLILCNLAVSMEGRTAMLDANAVECLVELLRGNELDSEATRENCVAALYALSHRSLRFKGLAKEARAVEVLKEIEETGTERAKEKARKVLQMMRAVGDADGEEGFEFDGILDSGGFARNRYRVGGARNNNLVNSTTF* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0850 529 SUPERFAMILY RING/U-box 15 104 - -
Apr1g0850 529 Pfam Armadillo/beta-catenin-like repeat 322 361 IPR000225 GO:0005515
Apr1g0850 529 SMART Ubox_2 32 95 IPR003613 GO:0004842|GO:0016567
Apr1g0850 529 CDD RING-Ubox 35 82 - -
Apr1g0850 529 Gene3D - 101 488 IPR011989 -
Apr1g0850 529 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Apr1g0850 529 SMART arm_5 402 445 IPR000225 GO:0005515
Apr1g0850 529 SMART arm_5 322 362 IPR000225 GO:0005515
Apr1g0850 529 SMART arm_5 281 321 IPR000225 GO:0005515
Apr1g0850 529 Pfam U-box domain 30 98 IPR003613 GO:0004842|GO:0016567
Apr1g0850 529 MobiDBLite consensus disorder prediction 1 32 - -
Apr1g0850 529 SUPERFAMILY ARM repeat 214 485 IPR016024 -
Apr1g0850 529 PANTHER U BOX DOMAIN-CONTAINING 1 520 - -
Apr1g0850 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 100 IPR013083 -
Apr1g0850 529 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 1 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0850 Apr-Chr1 11232913 11236196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0850 1 529 U-box Gene Family AT5G65200 57.271 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0850 - - gmx:100815075 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0850 1 11232913 11236196 Apr1g0850 1 11232913 11236196 ECH