Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0846 ATGGCATCATTTGCAGGCACTACACAGAAGTGCAAAGCATGCGAGAAAACAGTTTACTTGGTGGATCAGCTCACTGCTGACAACAAGGTCTATCACAAATCTTGCTTCAGATGTCACCACTGTAAGGGTACCCTCAAGTTGAGTAATTTTTGTTCCTTTGAGGGTGTTCTATATTGTAAGCCTCATTTTGATCAACTATTTAAGAAGACCGGCAGCTTGGAGAAGAGTTTTGAAGGTATTCCAAGAACTGCTAGACTTGAAAGATCTACTGATCAGGTCCAAATCAGTAGCAGAGTTTCAAATTTGTTTGCTGGAACTCAGGAAAAATGTGTTGCTTGCAAGAAAACGGTGTATCCAATTGAAAAGGTAGCTGTTGATGGAACATCTTACCATAAGGCTTGTTTCAGGTGCACCCATGGAGGATGTGTAATTAGTCCCTCAAATTATGTGGCCCACGAACATCGTCTTTATTGTAGGCACCATCATACTCAGTTGTTCAAGCAGAAAGGTAACTTCAGTCAACTTGATAAACAAGAAAATAATGAAGGGGTGACTGAGAACACAACAACTAAGGAGTAG 579 0.4076 MASFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNFCSFEGVLYCKPHFDQLFKKTGSLEKSFEGIPRTARLERSTDQVQISSRVSNLFAGTQEKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKQENNEGVTENTTTKE* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0846 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Apr1g0846 192 PANTHER OS06G0237300 PROTEIN 1 186 IPR045268 GO:0051015
Apr1g0846 192 SMART lim_4 109 161 IPR001781 -
Apr1g0846 192 SMART lim_4 10 62 IPR001781 -
Apr1g0846 192 CDD LIM1_SF3 7 69 - -
Apr1g0846 192 Gene3D Cysteine Rich Protein 104 174 - -
Apr1g0846 192 Gene3D Cysteine Rich Protein 5 75 - -
Apr1g0846 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Apr1g0846 192 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
Apr1g0846 192 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 186 - -
Apr1g0846 192 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Apr1g0846 192 Pfam LIM domain 11 65 IPR001781 -
Apr1g0846 192 Pfam LIM domain 110 165 IPR001781 -
Apr1g0846 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Apr1g0846 192 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 174 - -
Apr1g0846 192 CDD LIM2_SF3 110 170 - -
Apr1g0846 192 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0846 Apr-Chr1 11183343 11186958 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Apr1g0846 LIM 2.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0846 K09377 - gmx:100500501 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0846 1 11183343 11186958 Apr1g0846 1 11183343 11186958 ECH
Apr9g3073 9 37550009 37552923 Apr1g0846 1 11183343 11186958 PCT