Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0833 ATGAACAGCGATCTACACCGTTTCGCAGTCTCAACTCGCTTCAGCGGGTTCCCAAAATCCTTCTCTCTGAGAAAGAAGGTGCCATGGTGGTACCAAATCCTTGATCCAAGGTCAAAGTTCGTGGCGAGATGGAACCGCACGTTTCTCTACGCGTGCGTTGCGGCTCTGTTCTTAGACCCTCTATATTTCTATTTCCCCATAACGGGTGACAAAGCGTGCATGCAAACCGACTTGGTCCTTGGCGTCTTCGTCACCTTCTCTCGCACCGTCGCTGACCTCTTCTTTCTCTTCCACATGGTTCTTAAGTTCCGCACCGCTTTCGTTTCCCCTACCTCTCGCGTTTATGGTCGCAAAGAACTCGTCACTGATCCTCGTGCTATTGCCTCCCGCTACCTCAAACATGATTTCATTGTTGATCTCTCCGCCACCCTTCCTCTGCCTCAGATTGTGATCTGGTTCGTGATTCCAGCAGTGAAAACCTCAACCGCGGCTCACGTAAATCACACCCTGTCCTTGATTGTTCTGATACAGTTCATTCCTCGGTTGTTTCAGATTTTTCCCCTGCAAAGGAGAATCTTGAAAACTAGTGGGCTTATTACCAAAACTGCCTTGGCGGGGGCTGTACACAATCTTGGGCTCTACATGCTAGCCAGCCATGTTTTAGGAGCTTCATGGTATGTATCATCGATTCAGCGCCAATACGAGTGTTGGAGAATAATTTGCAGAAGAGAGATGAACAGAACGCACTCACCATCTTGTAATCCTTCGTTTCTCGACTGTGCGAGCTTGGACAACCATGAACGACAAGTATGGTTCAGACGCACGAGAGTTCTCAGTGATTGCGATGCCCTCAATGATAAGAACCAATTTCAGTTTGGATTGTTTGCCGATGCTTTCACTGATCATGTCTCTTCATCGAGATTCTTCCAAAAATACTTTTACTGCCTCTGGTGGGGTTTGAAGAATCTAAGTTCATATGGACAAAATCTTCAGACGAGCACGTATAGTGGTGAAACATTATTTTCAAGTTTCATCTGCATCGCGGGTCTAATTCTATTTGCGCATCTTATAGGTAACATGCAGAATTATCTGCAATCAACAACTGCGAGAGTTGAAGAGTGGAGACTGAAACAAAAGGATACAGAAGAGTGGATGAATCACCGGCAACTTCCACCAGAACTGCAACAACGTGTTCGTCGATTTGTTCAATATAAATGGCTTGCAACAAGAGGTGTAGACGAAGAATCCATTTTGCGCGCTTTGCCTTTGGACCTTCGACGCCAGATTCAGAGACATCTCTGTCTTGACATCGTTCGTCGGGTTCCGTTTTTTGGTCAAATGGATGACCAGCTCCTAGATGCTATATGTGAACGCCTTGTTTCATCCTTGAACACAAAAGACACATACATAGTCCGCGAAGGTGATCCAGTTAAAGAAATGCTTTTCATCATTAGAGGACAAGTGGAGAGCTCAACAACCGATGGTGGAAGATCAGGATTCTTCAACTCCATCACCCTAAGACCCGGTGACTTTTGTGGTGAAGAGTTGCTAACATGGGCATTGATGGCAACTTCAAGTCTTAACCTTCCATCTTCCACTAGAACAGTTAAGACGCTCACTGAAGTTGAAGCATTTGCACTAAGAGCTGAGGACCTCAAATTTGTGGCAAGTCAATTTAAGCGCCTCCACAGCAAAAAACTTCAACATGCTTTTAGGTACTATTCCCATCAGTGGAGGGCTTGGGGTGCTTGCTTTATACAAGCTGCTTGGAGGCGCCACCGCAAGAGAAAAATGGCAATGGAGTTGTTGGAAAAAGAGAACTTGTATTACACAAATGTGATGGAGATAGAAGAAGATGAGGAGGAAATTGGTGCTGGAGAGAGTTCAACTGGGGACAGTACAAGCTATGCCCAGAATCTTGGGGCTACGGTTTTGGCTTCCAAATTTGCTGCAAACACAAGAAAAGGGGCATTTAAGAAAGTTATGATTGCTGATGATAGAAGTTTGAAGATGCCCAAGATGTTCAAGCCAGCGGAACCTGATTTCTCAACATTTCATGAAGATTAG 2067 0.4533 MNSDLHRFAVSTRFSGFPKSFSLRKKVPWWYQILDPRSKFVARWNRTFLYACVAALFLDPLYFYFPITGDKACMQTDLVLGVFVTFSRTVADLFFLFHMVLKFRTAFVSPTSRVYGRKELVTDPRAIASRYLKHDFIVDLSATLPLPQIVIWFVIPAVKTSTAAHVNHTLSLIVLIQFIPRLFQIFPLQRRILKTSGLITKTALAGAVHNLGLYMLASHVLGASWYVSSIQRQYECWRIICRREMNRTHSPSCNPSFLDCASLDNHERQVWFRRTRVLSDCDALNDKNQFQFGLFADAFTDHVSSSRFFQKYFYCLWWGLKNLSSYGQNLQTSTYSGETLFSSFICIAGLILFAHLIGNMQNYLQSTTARVEEWRLKQKDTEEWMNHRQLPPELQQRVRRFVQYKWLATRGVDEESILRALPLDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDTYIVREGDPVKEMLFIIRGQVESSTTDGGRSGFFNSITLRPGDFCGEELLTWALMATSSLNLPSSTRTVKTLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRAWGACFIQAAWRRHRKRKMAMELLEKENLYYTNVMEIEEDEEEIGAGESSTGDSTSYAQNLGATVLASKFAANTRKGAFKKVMIADDRSLKMPKMFKPAEPDFSTFHED* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0833 688 ProSiteProfiles cAMP/cGMP binding motif profile. 443 573 IPR000595 -
Apr1g0833 688 Pfam Ion transport protein 44 371 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Apr1g0833 688 SUPERFAMILY Voltage-gated potassium channels 35 365 - -
Apr1g0833 688 SMART cnmp_10 443 574 IPR000595 -
Apr1g0833 688 Gene3D Jelly Rolls 441 561 IPR014710 -
Apr1g0833 688 Pfam Cyclic nucleotide-binding domain 466 554 IPR000595 -
Apr1g0833 688 Gene3D Helix hairpin bin 369 434 - -
Apr1g0833 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 9 685 - -
Apr1g0833 688 Gene3D - 62 367 - -
Apr1g0833 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 9 685 - -
Apr1g0833 688 SUPERFAMILY cAMP-binding domain-like 372 568 IPR018490 -
Apr1g0833 688 CDD CAP_ED 443 574 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0833 Apr-Chr1 10846031 10850568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0833 3 682 Ion Channels AT3G48010 65.909 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0833 K05391 - gmx:100783672 1249.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0833 1 10846031 10850568 Apr1g0833 1 10846031 10850568 ECH