Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0832 ATGGCAACTCGCAAACTTTCCTGGCTCCTCTCTCGCTCTCTCTCTGCTTCCCCTTCTTCTCAAGCTGCTTCTCTTCTTCACTCACTAGGGAGAAACTATGGCAAATTGGGGAACGTAAACAGATTCAGCACTGTAGCAGCAGTTGAGGAATTGATCTCTCCACAAGTGCCAATAACATACACAAAGCATCTTATAAATGGGCAATTTGTGGATGCTGCATCAGGGAAAACTTTTCCGACTTACGACCCGCGCACAGGAGAAGTTATTGCTCATGTCTCTGAAGGTGATGCTGAAGATATCAACCGTGCGGTATCAGCAGCTCGCAAAGCCTTTGATGAAGGACCATGGCCAAAAATGAATGCTTATGAAAGATGTAAGATAATTCTTCGCTTTGCTGATTTGGTTGAGAAACACAGTGAGGAGCTTGCAGCTCTGGAGACATGGAATTGTGGAAAGCCTTATGAACAGTCTGCCAAGTCTGAATTACCTTTATTTGTGCGTTTGTTTCGTTACTATGCTGGTTGGGCAGATAAAATACATGGTTTGACAGTGCCTGCTGATGGAAATTATCATGTAGAGACATTGCATGAACCAATTGGTGTTGCAGGACAAATCATACCTTGGAACTTCCCTCTCATCATGTTTGCTTGGAAAGTTGGACCAGCTCTAGCTTGTGGTAATACTGTCATCCTCAAGACTGCTGAACAAACACCTTTAACAGCTCTCTATGTGGCAAAACTATTTCATGAGGCTGGTCTTCCACCAGGTGTTTTGAATATAGTTTCTGGCTATGGTCCAACTGCTGGTGCAGCTCTTGCAAGTCATATGGATGTGGACAAGCTAGCATTTACTGGATCCACTGAGACTGGAAAAATTGTACTTGAATTGGCCGCAAGAAGCAACCTGAAGCCTGTTACACTGGAACTTGGAGGAAAATCACCTTTCATTGTATGTGACGATGCTGATGTTAACAAGGCTGTGGAACTTGCACATTTTGCTCTATTCTTTAATCAGGGGCAATGTTGCTGTGCTGGGTCTCGTACCTTTGTACAAGAGCGTATCTATGATGAGTTCTTGGAGAAATCGAAGGCCCGTGCTTTGAATCGTGTTGTTGGTGATCCCTTCAAAAAAGGGGTTGAACAAGGCCCTCAGATTGACGTGGAACAATTTCAGAAAGTCCTTAGGTACATAAAGTCTGGTATTGACAGTAAAGCTACTCTTGAATGTGGGGGTGACAGAATTGGCTTAAAGGGTTTCTTTGTTCAGCCTACTGTCTTCTCAAACATTCAGGATGATATGTTGATAGCAAAAGATGAAATCTTTGGCCCAGTTCAAACCATCTTGAAATTCAAGGACATTGACGAAGTAATTCGAAGGGCAAACGCAACGCATTATGGTCTAGCAGCTGGTGTTTTCACGAAGAACGTGCACACAGCCAACACTTTGATGCGAGCACTGAAGGTTGGAACTGTGTGGATTAATTGCTTCGATGTTTTTGATGCTGCAATTCCCTTTGGAGGGTACAAGATGAGTGGCATTGGCAGAGAAAAAGGAATCTACAGTCTCAACAATTACCTGCAGGTCAAAGCCGTGGTTTCACCTCTGAACAATCCTGCATGGCTATGA 1626 0.4379 MATRKLSWLLSRSLSASPSSQAASLLHSLGRNYGKLGNVNRFSTVAAVEELISPQVPITYTKHLINGQFVDAASGKTFPTYDPRTGEVIAHVSEGDAEDINRAVSAARKAFDEGPWPKMNAYERCKIILRFADLVEKHSEELAALETWNCGKPYEQSAKSELPLFVRLFRYYAGWADKIHGLTVPADGNYHVETLHEPIGVAGQIIPWNFPLIMFAWKVGPALACGNTVILKTAEQTPLTALYVAKLFHEAGLPPGVLNIVSGYGPTAGAALASHMDVDKLAFTGSTETGKIVLELAARSNLKPVTLELGGKSPFIVCDDADVNKAVELAHFALFFNQGQCCCAGSRTFVQERIYDEFLEKSKARALNRVVGDPFKKGVEQGPQIDVEQFQKVLRYIKSGIDSKATLECGGDRIGLKGFFVQPTVFSNIQDDMLIAKDEIFGPVQTILKFKDIDEVIRRANATHYGLAAGVFTKNVHTANTLMRALKVGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLNNYLQVKAVVSPLNNPAWL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0832 541 SUPERFAMILY ALDH-like 56 535 IPR016161 GO:0016491
Apr1g0832 541 Pfam Aldehyde dehydrogenase family 69 531 IPR015590 GO:0016491
Apr1g0832 541 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 307 314 IPR029510 GO:0016491
Apr1g0832 541 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 335 346 IPR016160 GO:0016491
Apr1g0832 541 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 29 541 - -
Apr1g0832 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 311 500 IPR016163 GO:0016620
Apr1g0832 541 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 29 541 - -
Apr1g0832 541 CDD ALDH_F2BC 58 532 - -
Apr1g0832 541 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 529 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0832 Apr-Chr1 10833630 10838648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0832 1 541 Aldehyde Dehydrogenase Gene Family AT3G48000 78.413 0.0 902
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0832 K00128 - gmx:100811501 992.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0805 3 21124654 21128386 Apr1g0832 1 10833630 10838648 ECH
Apr1g0832 1 10833630 10838648 Apr1g0832 1 10833630 10838648 ECH