Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0831 ATGCCTCCCAAACTCAACAACAATCAAATAGAAGAACGCCGTCCGTTATCTTTTCCCGCAGTGCATCCTTGCGAGGCTATATCTCCTTCCATCCTCCTCGCTTCCCTCATAACCCTCTCTCAGACCATATGCAACTTCCCATCCAACACGTTCCCCACGCAACGCCGTAACGCCAGAGAAACGGCGCGCCAAATCTCCATTCTCCATGCACTCTTCCAAGACCTCCGTGACCGCGGTTCCGTTATCCCCTACCCCGTTCTCCTCTGCTTCTCGGAGCTCCACGTCACCTTCCAAAAAATCCACTTCTTAATGCAAGACTGCGTCCGCGAAGGCACACGCCTCTGGATGCTCGTAAAATCCCAACACGTGTCCACGCAGTTTCGTCTCCTCATTCGCGCCATGGCCACCGCTCTCGACGTGTTACCCCTTCAGAGCATCGAAATATGCGGCGAAGTGAAAGAGTTAGTGGAATTAGTTACCAGGCAGGCTAGGAAGACCGAGTTCGCACTCGACCAAAACGACGAACGCGAAACGAAACGACTGCGTTTTGTTCTGGACCAGTTCGAGAGAGGAACCGAGCCTGACCTGGACGCCATGAAGCTAGTCCTTAACTACCTTGAAATTAAAAGCTGGAGTTCTTGTAACAAAGAGATCAAATTCCTCGAAGACGAAAGAAACTCCAACGAGCGAGAGTTTAATTTGTTGAGCAGTTTGATTGGGTTCTCGTGTTACTCTAGAGTTATCATATTCGAAACTCTCGATTTCCAATCACGTACCACGGAGCAACATGAAGCACGATGCAACACAGAGACGTTAAGTTGCGTAATGCCAGAGGATTTCCGGTGTCCAATTTCGCTGGAGATAATGACCGATCCTGTGACCGTTTCCACTGGCCAAACCTACAACCGAGCCTCCATTCAGAAATGGCTTAAAGCAGGAAACACCATGTGTCCAAAAACAGGGGAGAAGCTAACCAACACAGAATTGTTCCCCAACACGTCGCTTAAAAAGCTCATCCAACAGTTCTGTTCTGACAACGGAATCTCCATCGCCAACTCGACTAACTTGAACCGAACCATAACCAAAACCATCGAACCGGGTTGTCCCGCCGCGGCGCATGCCATGCAGTATCTTTCGTGGTTTATTGCAAGTAAGCTCGTGTTCGGAACAGAGGAACAGAAAAACAAAGCCGCTTATGAAATTCGCATGCTTGCGAGGTCCAACATTTTCAATAAGGCGTGTTTGGTTGAAATGGGAACCGTTCCGCCGCTTCTGGATCTTCTTGATACGGATGATAGAATCACGCAAGAGAACGCAATTGGTGCTCTTATGAAGCTCTCAACGCACGCCAGTGGCCAGCAAGTTATCATAGATAGTAGAGGTTTAACGCCAATTATTAAGGTTCTCAAAAGAGGGCTCAGTCTAGAAGCTCGCCACGTTGCAGCTGCTACGGTGTTTTATCTTTCGTCGGTGAAAGAGAACAGGAAATTAATAGGGGAAAATCCAGAGGCGATTCCGGGTTTAGTTGAGTTGATCAAGGAAGGAACAACCAGTGGGAAAAAGAACGCAGTGGTTGCGATTTTTGGTCTTCTTTTGCTTCCTAAGAATCACTCGAAGGTGGTTGCAGCGGGTGCTGTTCAGGCGCTTGTTGATGTTATAGCTTCTTCGGATAAAGCTGATCTTGTAACTGATTGCTTAGCGGTTCTCGTGGCCTTGGCGGAGAGCGGTGAAGGTGCTCTTGCTGTGTTACAAGCCCAAGTGCTGTCTTTGGTAACTGGGATTTTAAAATCTGCTACCTCGCGCGCAGGGAAGGAATACTGTGTCGCAATTTTGCTTTCTTTGTGGGTTCGTTTTGGTGTAGAAGTAAAGGGTGTTCTGGCCAGGGACTCTTCGCTTATGCCTTCGCTTTATTCCCTTCTCACGGATGGTACTCCTCATGCGGCCAAGAAAGCACGTTCCCTCATCCAAGTTCTACAAGATTTCAACGACAAAAGAAGTTCTGGAATGGAGGGCTCCTCTGTTTCGCAGCAACGATTGGTTCGATTATCTTGA 2052 0.4844 MPPKLNNNQIEERRPLSFPAVHPCEAISPSILLASLITLSQTICNFPSNTFPTQRRNARETARQISILHALFQDLRDRGSVIPYPVLLCFSELHVTFQKIHFLMQDCVREGTRLWMLVKSQHVSTQFRLLIRAMATALDVLPLQSIEICGEVKELVELVTRQARKTEFALDQNDERETKRLRFVLDQFERGTEPDLDAMKLVLNYLEIKSWSSCNKEIKFLEDERNSNEREFNLLSSLIGFSCYSRVIIFETLDFQSRTTEQHEARCNTETLSCVMPEDFRCPISLEIMTDPVTVSTGQTYNRASIQKWLKAGNTMCPKTGEKLTNTELFPNTSLKKLIQQFCSDNGISIANSTNLNRTITKTIEPGCPAAAHAMQYLSWFIASKLVFGTEEQKNKAAYEIRMLARSNIFNKACLVEMGTVPPLLDLLDTDDRITQENAIGALMKLSTHASGQQVIIDSRGLTPIIKVLKRGLSLEARHVAAATVFYLSSVKENRKLIGENPEAIPGLVELIKEGTTSGKKNAVVAIFGLLLLPKNHSKVVAAGAVQALVDVIASSDKADLVTDCLAVLVALAESGEGALAVLQAQVLSLVTGILKSATSRAGKEYCVAILLSLWVRFGVEVKGVLARDSSLMPSLYSLLTDGTPHAAKKARSLIQVLQDFNDKRSSGMEGSSVSQQRLVRLS* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0831 683 MobiDBLite consensus disorder prediction 664 683 - -
Apr1g0831 683 Pfam Armadillo/beta-catenin-like repeat 411 443 IPR000225 GO:0005515
Apr1g0831 683 PANTHER OS07G0532750 PROTEIN 11 668 - -
Apr1g0831 683 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Apr1g0831 683 Gene3D - 367 675 IPR011989 -
Apr1g0831 683 PANTHER U BOX DOMAIN-CONTAINING 11 668 - -
Apr1g0831 683 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Apr1g0831 683 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Apr1g0831 683 SUPERFAMILY ARM repeat 390 658 IPR016024 -
Apr1g0831 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 350 IPR013083 -
Apr1g0831 683 CDD RING-Ubox_PUB 280 322 IPR045210 -
Apr1g0831 683 SMART arm_5 533 574 IPR000225 GO:0005515
Apr1g0831 683 SMART arm_5 407 448 IPR000225 GO:0005515
Apr1g0831 683 SMART arm_5 449 490 IPR000225 GO:0005515
Apr1g0831 683 SUPERFAMILY RING/U-box 271 349 - -
Apr1g0831 683 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 419 461 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0831 Apr-Chr1 10779516 10783420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0831 13 667 U-box Gene Family AT1G60190 39.462 1.30e-159 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0831 - - gmx:100810963 925.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0831 1 10779516 10783420 Apr9g3087 9 37664636 37668043 ECH
Apr1g0831 1 10779516 10783420 Apr1g0831 1 10779516 10783420 ECH