Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0828 ATGGAGATAGTGATCTCTTTGATCATGTTGCTTGTGGGGATTGCTGTTTTGGTGGTTATCCATGTGTGCATAGTTGGAAGGGCTTTCAGAAGGGACAATAACAATCATGGTCATGGTGAAAGTACTCAAGGACAGAGTAGCGGTACCATGAAAACAATGTTTGGTGAAAACATTGGTGACTTGAAGAACCTTCCTTGCTTTGATTATGAGGAGCCTGAGAAAGGGTGTAGCCAAGTGGATTGTGCTGTTTGCTTGGAGAAATTCAAGGTGGGTGATGTGTGCAGGTTGTTGCCCAATTGCAGCCATAGTTTCCATGTTCAATGCATTGATTTGTGGATACTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCCCGAGTAATGGTTCCCTCTGTTTTGAGGGAGGAAAGTGCTGTTTCTGACAGGGTAGAACTTCAAATGGCATAG 456 0.4342 MEIVISLIMLLVGIAVLVVIHVCIVGRAFRRDNNNHGHGESTQGQSSGTMKTMFGENIGDLKNLPCFDYEEPEKGCSQVDCAVCLEKFKVGDVCRLLPNCSHSFHVQCIDLWILKTPFCPICRTWVHSRVMVPSVLREESAVSDRVELQMA* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0828 151 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 150 - -
Apr1g0828 151 SUPERFAMILY RING/U-box 68 129 - -
Apr1g0828 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 131 IPR013083 -
Apr1g0828 151 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 150 - -
Apr1g0828 151 SMART ring_2 81 122 IPR001841 -
Apr1g0828 151 Pfam Ring finger domain 80 123 IPR001841 -
Apr1g0828 151 ProSiteProfiles Zinc finger RING-type profile. 81 123 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0828 Apr-Chr1 10731615 10732070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0828 61 127 C3H Transcription Factor Family AT4G30370 47.761 1.26e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0828 - - gmx:102662620 203.371