Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0824 ATGTCTGACAGAGGCGTCAATTTCAAGTGGTTCGATGGCTTTTTCTTGTCTATGCTCGCTACCAGCGTAGCCATTGTGGTGATTAATTGGAAGCGGTACCATTCTTGTACACACCCTTTGCACATTTGGATTGTGGTTGACTACACTACTGTTTTCACTTTTCGGCTTTTGATGTTTGTTGATAATGGGCTTGCTTCGGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTGGTTGTGCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACAATAATTGGTTCCTTGTGGTTCAGCAATGCTAAAATCTGTTTGCCAGGAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTGCTTTGTATTGCTTGCATGTCAATAGGGAAGTGGTTGAAACGAAGACAAGCACACTCGTTAGGTGCTCGAGAGGGTATCCCTGTATCTGCATATGGGGTTCTAGTTGAAATGATCCGAGTGCCTGATTGGGCATTTGAGGCTGCAGGTCAAGAAACAAGGAGCATAGGCCAAGATACTACATATCATCCTGGACTTTACCTAACTCCAGCTCAGAGAGAAGCGGTTGAAGCTTTAATTCAGGAACTCCCGGAGTTCAGGTTAAATGCTGTTCCTACTAATTGCAGTGAATGTCTGATCTGCTTAGAAGAGTTCCGTGTAGGGAATCAGGTCCGCGGCCTGCCATGTGCTCATAATTTTCATGTTGAATGCATCGATGAGTGGCTTCGGCTTAATGTGAAATGTCCTCGATGCCGTTGTTCAGTATTTCCTAATCTTGATCTCAGTGCTCTGTCCAATATCCGTTCCGAGTCTGAACAATCTTCCGCCAGTGTTGTGACAGCAACCAGATATGTGACAGGCCAACCTTCTAGTCAGAGTTACCTGTTGAGACTACAGGGGCTTCTCCGCCCAGTGTGTACTGAAATTGCTGTGCCAGTTGGTGAGATAGACAGTGCTTTGGAAAATGCTGAAGATGGTGTTAGACCTGTTGTCACTCGAAACATGCCAACTGGAGACCAGGCCATTTCTGTTGAACGCTTGCCTGTTAGTTTTTCCTCTGCACAAAATTAG 1140 0.4553 MSDRGVNFKWFDGFFLSMLATSVAIVVINWKRYHSCTHPLHIWIVVDYTTVFTFRLLMFVDNGLASGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGSLWFSNAKICLPGEGQKWGFLIWLLFSYCGLLCIACMSIGKWLKRRQAHSLGAREGIPVSAYGVLVEMIRVPDWAFEAAGQETRSIGQDTTYHPGLYLTPAQREAVEALIQELPEFRLNAVPTNCSECLICLEEFRVGNQVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNIRSESEQSSASVVTATRYVTGQPSSQSYLLRLQGLLRPVCTEIAVPVGEIDSALENAEDGVRPVVTRNMPTGDQAISVERLPVSFSSAQN* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0824 379 SMART ring_2 234 274 IPR001841 -
Apr1g0824 379 CDD RING-H2_RNF111_like 233 277 - -
Apr1g0824 379 Pfam Ring finger domain 233 275 IPR001841 -
Apr1g0824 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 IPR044793 GO:0004842|GO:0010182
Apr1g0824 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 280 IPR013083 -
Apr1g0824 379 SUPERFAMILY RING/U-box 215 283 - -
Apr1g0824 379 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 359 - -
Apr1g0824 379 ProSiteProfiles Zinc finger RING-type profile. 234 275 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0824 Apr-Chr1 10531289 10537735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0824 58 360 C3H Transcription Factor Family AT3G47990 70.130 3.80e-151 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0824 K16284 - gmx:100786854 669.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0824 1 10531289 10537735 Apr1g0824 1 10531289 10537735 ECH
Apr9g3094 9 37751085 37760885 Apr1g0824 1 10531289 10537735 PCT