Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0821 ATGAAGAATTTGTGTGGGCATAAACAAATTTCTAACAGTGGCAAGTTAGGGAGAAGGCTTTCGCTTGGTGAGTACAACCGAGCAGTGTCATGGTCTAAGTATCTCGTCTCTTCTGGGGCTGCCATAAAGGGAGAAGGAGAAGAGGAATGGAGTGCTGATATGTCTCAGTTGTTCTTTGGATCCAAATTTGCTTCTGGAAGACATAGCAGAATCTACAGAGGTGTTTATAAACAAAAGGATGTGGCAATTAAGCTTGTGAGTCAACCTGAGGAGGATGAGGACTTGGCTGCTTTTCTTGAGAAGCAATTCACTTCTGAAGTTTCTTTGCTCCTTCACTTGCGCCACCCAAATATCATTACTTTTATTGCTGCTTGCAAGAAACCTCCAGTCTTTTGCATAATTACTGAATATTTGGCTGGGGGTTCACTGGGAAAATTCCTGCATCACAATCGACCGCGTTTGCTTCCACTCAAACTTGTTCTGAAATTAGCCCTTGACATTGCAAGGGGAATGCAATATCTTCATACTCAGGGGATACTTCATAGGGATCTCAAATCAGAGAATCTCCTTCTGGGGGAAGATATGTGTGTGAAAGTAGCAGATTTTGGTATCTCATGCTTAGAATCTCAATGTGGCAGTGCAAAAGGATTCACTGGAACTTACCGTTGGATGGCGCCTGAAATGATCAAAGAAAAGCAGCATACCAAGAAAGTAGATGTCTATAGTTTTGGCATAGTTCTATGGGAACTATTAACGGGACGAACACCATTTGACAATATGACAGCAGAGCAGGCAGCATTTGCAGTTTCCCACAAGAACGCAAGACCACCAATGCCAGCTGAGTGTCCTTGGGCATTTCGTGATCTGATAAATAGATGCTGGTCAAGCAACCCAGATAAAAGGCCACATTTTGATGAGATAGTTTCCATTTTGGAGTACTATAGCGAATCACTCGAGCAGGATCCAGACTTTTTCACAACATACAAACCGAGTCCTTCTCCAAGTAGTACTAATGCAATTTTGGGATGCCTCCCAAAATGCAATTCTCGCAATAAATTTGGTACTTGCAAAGCTTAG 1077 0.4253 MKNLCGHKQISNSGKLGRRLSLGEYNRAVSWSKYLVSSGAAIKGEGEEEWSADMSQLFFGSKFASGRHSRIYRGVYKQKDVAIKLVSQPEEDEDLAAFLEKQFTSEVSLLLHLRHPNIITFIAACKKPPVFCIITEYLAGGSLGKFLHHNRPRLLPLKLVLKLALDIARGMQYLHTQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKQHTKKVDVYSFGIVLWELLTGRTPFDNMTAEQAAFAVSHKNARPPMPAECPWAFRDLINRCWSSNPDKRPHFDEIVSILEYYSESLEQDPDFFTTYKPSPSPSSTNAILGCLPKCNSRNKFGTCKA* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0821 358 CDD STKc_MAP3K-like 64 311 - -
Apr1g0821 358 Gene3D Transferase(Phosphotransferase) domain 1 140 331 - -
Apr1g0821 358 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Apr1g0821 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Apr1g0821 358 Pfam Protein tyrosine and serine/threonine kinase 59 311 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Apr1g0821 358 ProSiteProfiles Protein kinase domain profile. 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0821 358 Gene3D Phosphorylase Kinase; domain 1 47 138 - -
Apr1g0821 358 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Apr1g0821 358 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Apr1g0821 358 SMART serkin_6 57 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0821 Apr-Chr1 10460520 10465519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0821 25 320 MAP Kinase Kinase Kinase AT1G62400 61.667 1.49e-132 382
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Apr1g0821 PK_Tyr_Ser-Thr 1.7e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0821 - - gmx:100807757 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0821 1 10460520 10465519 Apr1g0821 1 10460520 10465519 ECH
Apr1g0821 1 10460520 10465519 Apr9g3096 9 37780625 37783555 PCT