Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0802 ATGGATCCTGAGACAAGGTTCAAAGAAATTTCTTTGCAGCCTATGCATTTACAAGAAAGTTTCTTGCAATCTAGTATGAAATACAATATTTCTTATGGGAATCCCTCTCAGGAATTTTTGGAAGATTTTCATTATAGTGATCAGTTTCACGTGGATGATTCCTCGACCAATCCGATCCAATTTCAAACTCCAAATTTTGATGGTTTTGATAATTTCACCTTTAATTGTTCATCATCAGATTTTGATGTTTATGAGTGCAAGCCTTTTGCTGAGAATACTAGCAATGGGCATCCTCATGTTTGGAACAATTTCCTATATAGCTTGAGCCTTCCTCAAAGAAATCAGTTAGACATGATGGTTGCAAACCAAAATTTTTTTCCTTTTAATCCTCAAGAAACCAATCCCATGAATTTTGTTGCACCAGATGAAGTCTCGTGCATTTTTCCTGTAAATTATTACAAAGAAGTTGGAGTGAACAAAAACAATAGGTCATATCCAACCACTAGAAGGACATATAAAGTTCCTAAGAAGTCCAACATGGTAAAGGGCCAATGGACAGTAGAAGAAGACGGGTTGTTGATTCAACTGGTGGAACAACATGGATTGAGGAAGTGGTCTCATATTGCTAAGGTATTGCCTGGAAGAGTAGGAAAACAGTGCAGAGAGCGATGGCATAACCATCTAAGGCCTGACATTAAGAAGGACAATTGGACTGATGAAGAGGATAAAATACTAATCCAAGCTCATGGAGAGTTAGGAAATAAATGGGCTGAGATTGCTAAAAGGTTACCAGGTAGAACTGAAAACTCAATCAAAAACCATTGGAATGCAACCAAGAGAAGACAATATTCCAAAAGAAAGTGTCGCTTAAAGCACCCTAGAGGCACTCTTTTGCAAGACTATATCAAGAGCTTGAACTTAGACAAGAACCCTCCAATAGATTATAGGAGAAAATCTTCTTCTAATTATGCTAGTGCCATGAAGAACAAAACTAGCACAAGCAAAGTCACCATACCAACTCTTCCCCTAACAGCAGATCAATTTTGTGCCAATGATTGCTTGGTGCCAAATTATGATTTTAATGGGGTCCCAGATTTTTTATTTGCTGAGAATTTGTTTGAAGAAGGGTGTAGTATTGATTCTCTCCTAGATGGTATGCCTTGTGCTCCTACTTTGGATAAGCAAGATTTTGAAGAAAAAATGCAATGTGATCCTATTAAGGAAGGAAAATATTTTGATCAGGGAGGAATAAAATGTGCTCATGTTGTTAATATCAGTGAGAATCATGCTGAGACAGAGATGCCACTAGAGATTATGGAGCCAATTTTGGAGGTTGAAATTAAGGAGGAGCTGGATTTAGTAGAGATGATGTCTCAGGTCAATAATGAAATTGTTCATGAGACATTATAA 1410 0.3716 MDPETRFKEISLQPMHLQESFLQSSMKYNISYGNPSQEFLEDFHYSDQFHVDDSSTNPIQFQTPNFDGFDNFTFNCSSSDFDVYECKPFAENTSNGHPHVWNNFLYSLSLPQRNQLDMMVANQNFFPFNPQETNPMNFVAPDEVSCIFPVNYYKEVGVNKNNRSYPTTRRTYKVPKKSNMVKGQWTVEEDGLLIQLVEQHGLRKWSHIAKVLPGRVGKQCRERWHNHLRPDIKKDNWTDEEDKILIQAHGELGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRLKHPRGTLLQDYIKSLNLDKNPPIDYRRKSSSNYASAMKNKTSTSKVTIPTLPLTADQFCANDCLVPNYDFNGVPDFLFAENLFEEGCSIDSLLDGMPCAPTLDKQDFEEKMQCDPIKEGKYFDQGGIKCAHVVNISENHAETEMPLEIMEPILEVEIKEELDLVEMMSQVNNEIVHETL* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0802 469 ProSiteProfiles Myb-like domain profile. 229 279 IPR001005 -
Apr1g0802 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 177 232 IPR017930 -
Apr1g0802 469 SUPERFAMILY Homeodomain-like 179 275 IPR009057 -
Apr1g0802 469 CDD SANT 236 279 IPR001005 -
Apr1g0802 469 Gene3D - 235 296 - -
Apr1g0802 469 PANTHER MYB PROTEIN-RELATED 114 383 - -
Apr1g0802 469 PANTHER BNAC03G62830D PROTEIN 114 383 - -
Apr1g0802 469 Pfam Myb-like DNA-binding domain 185 242 - -
Apr1g0802 469 CDD SANT 185 228 IPR001005 -
Apr1g0802 469 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 283 IPR017930 -
Apr1g0802 469 ProSiteProfiles Myb-like domain profile. 177 228 IPR001005 -
Apr1g0802 469 Gene3D - 181 233 - -
Apr1g0802 469 SMART sant 233 281 IPR001005 -
Apr1g0802 469 SMART sant 181 230 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0802 Apr-Chr1 10026501 10028124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0802 82 393 MYB Transcription Factor Family AT4G18770 50.592 5.07e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0802 Myb_DNA-bind_6 1.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0802 K09422 - gmx:102662267 657.136