Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0797 ATGGAGAACCTGTACAATTTTCACTTTTCATCTAGTTACTCAGAGCAGCCATCCATGGCTCCTCCACCTTCACAGCCTCCACCGGCACTGAACGCAATTTCATCCATTAGGACATTCGTTCAGTCCAGTTCTTCTTCATCGGATGATTCTATAAAAGCACTTCAAACTAAAGTTGCTTCTCATCCTCTTTTTCCTCAGCTCCTCCAAGCCCACATCGATTGCCACAAGGTGGGAGCGCCGCCAGAGATGGCGCAAGTTTTTGATGGAATGAGAGGAGAGAACAGTGGTGTATGTCACATATCTGGCTTCTCAGGTGCTGATCCCGATCTGGACCTTTTCATGGAAATGTACTGTGATTTATTGGTGAAGTACAAATGGGATCTTTCAAGGCCCTATGACGAGGCAACTGCGTTCCTCAACCACATGGAAACTCAACTTCACTCTATTTGCCACCCTGCTGCCACAAACAACACTCCTCAAACTGATGAAGTTGGTGGATCATCTGAAAAGGATTTTAGTACAGTGGAGAAAGAGGCAACTGTGGAAGGGAGGAGAAATGAAGTTCAAGAGTTCAAGGATGGTCTTCTACATAGATATAGCGGCTACATTACTAATCTGAAGCACGAATTCTCCAAAAAGAAGAAGAAAGAAAAACTACCAAAACAAGCAAAGCAAATCTTACTTGCATGGTGGAATGTTCACTTTAAATGGCCATACCCCACGGATGCGGACAAGGTTGCCCTAGCTGAATGGACTGGTCTGGACCAGAAGCAAGTAAATAATTGGTTTGTAAACCAAAGAAAACGCCATTGGAAATCTACGGAGGAAATGCAAGCTATCATTTTGAATGGTCTCTATGGACCTCCACATCAGTGA 876 0.4418 MENLYNFHFSSSYSEQPSMAPPPSQPPPALNAISSIRTFVQSSSSSSDDSIKALQTKVASHPLFPQLLQAHIDCHKVGAPPEMAQVFDGMRGENSGVCHISGFSGADPDLDLFMEMYCDLLVKYKWDLSRPYDEATAFLNHMETQLHSICHPAATNNTPQTDEVGGSSEKDFSTVEKEATVEGRRNEVQEFKDGLLHRYSGYITNLKHEFSKKKKKEKLPKQAKQILLAWWNVHFKWPYPTDADKVALAEWTGLDQKQVNNWFVNQRKRHWKSTEEMQAIILNGLYGPPHQ* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0797 291 ProSiteProfiles ELK domain profile. 190 210 IPR005539 GO:0003677
Apr1g0797 291 SUPERFAMILY Homeodomain-like 211 283 IPR009057 -
Apr1g0797 291 SMART ELK_2 190 211 IPR005539 GO:0003677
Apr1g0797 291 SMART KNOX2_2 100 151 IPR005541 GO:0003677|GO:0005634
Apr1g0797 291 Pfam KNOX2 domain 105 150 IPR005541 GO:0003677|GO:0005634
Apr1g0797 291 SMART HOX_1 212 277 IPR001356 GO:0003677
Apr1g0797 291 MobiDBLite consensus disorder prediction 152 168 - -
Apr1g0797 291 Pfam ELK domain 191 211 IPR005539 GO:0003677
Apr1g0797 291 Gene3D - 207 280 - -
Apr1g0797 291 Pfam KNOX1 domain 55 93 IPR005540 GO:0003677|GO:0005634
Apr1g0797 291 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 43 288 - -
Apr1g0797 291 MobiDBLite consensus disorder prediction 1 18 - -
Apr1g0797 291 SMART KNOX1_2 52 96 IPR005540 GO:0003677|GO:0005634
Apr1g0797 291 MobiDBLite consensus disorder prediction 152 179 - -
Apr1g0797 291 CDD homeodomain 222 273 IPR001356 GO:0003677
Apr1g0797 291 MobiDBLite consensus disorder prediction 1 31 - -
Apr1g0797 291 ProSiteProfiles 'Homeobox' domain profile. 210 273 IPR001356 GO:0003677
Apr1g0797 291 Pfam Homeobox KN domain 230 269 IPR008422 GO:0003677|GO:0006355
Apr1g0797 291 ProSitePatterns 'Homeobox' domain signature. 248 271 IPR017970 GO:0000981|GO:0006355
Apr1g0797 291 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 43 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0797 Apr-Chr1 9858819 9868259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0797 1 287 Homeobox Transcription Factor Family AT1G23380 44.000 6.62e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Apr1g0797 KNOX2 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0797 - - gmx:102662019 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0797 1 9858819 9868259 Apr9g3118 9 37993042 37999227 ECH
Apr1g0797 1 9858819 9868259 Apr1g0797 1 9858819 9868259 ECH