Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0789 ATGGGCATCGATATTAAGGGACAAATCGAGAAGGTGAATGGGAAGGAGCTGAGTTACCGTGAGTTTGTGGAGAGATATATGCAGAAGAACCAGCCCGTGGTGCTCACTGGAATGATTGACCATCACCATTGGAGGGCTTGCACTGATTGGGTCACCCCTCATGGCCAACCCAATTTTCAATTTTTATCCACCCATTTTGCCTCTTCTAAAGTTCAGGTTGCAGATTGTGACACCAGAGAATTCACTGATCAGAAAAGAGAGGAGATATTGGTGTCAGATTTTATAGGACGTTGCCTTCAACTTGAGGATTCTGCATGTCAGTGTAATAATGAAATTGGTGCCACTAACTGTCACCCTATATCTGTACCATATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGAATACGTAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACCTATATCTTGACAATTTCAAAATGCATACAGATTCTGACACAGACCAACAAAATAAGGAAATATGCTGTTCTGACTATCGATTTGTTTACATGGGGGTGAAAGGATCTTGGACTCCTCTTCACGCTGATGTTTTTAGGTCCTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGCTTTTTCTAGATCCTTCCCAGTGTCATCTTGTGTTTGACAGGAATATGAAAAATTCTGTATATAATATCTTTGATGAAGTATCTGACTCAAAATTTCCTGGTTTTAACAAGGCAATCTGGTTAGAATGTACACAAGAAGCAGGTGAAATTATATTTGTTCCTAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACGATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGGGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATGTATGTGATGATTTTGAGGGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAATTTTTTTGACTTCCTTACTTTCATGTCATACTTCACCTTGGCCAACTTGGTGCTGCTTTCCTACGTAAATGGAAGATATGGAAGTACCACTCAAAGTTCATCAATAATATCTCAGCATTTATCCATGAATCTTGGGTGTATAAAAAAGATTGCATCGGAGATGAAACACGTGCATGCTCTGGAAGGAAATCATGACTGTGTTGTGGATATGATCAAAGCATATGAAGATCCTAGGTTTTCCAAATTGTGCATGCATGTAGGAAGAACATATATAATGATACATGAGCAATCTTATTTGTCCTTTGATATCAAGAATGCTTCACTGGGTGATTTGGTGGACCTCAATGTGATGAAAGCGCACACATCTTCTCAGATCTACAAACCTGAAGATCTTATTAAATTTATGGACGATGCTGTTGCAGAACTGAGTGACTGTTACATTGAGCTATCTGTACTCAGTGTCACTTGA 1473 0.3938 MGIDIKGQIEKVNGKELSYREFVERYMQKNQPVVLTGMIDHHHWRACTDWVTPHGQPNFQFLSTHFASSKVQVADCDTREFTDQKREEILVSDFIGRCLQLEDSACQCNNEIGATNCHPISVPYLKDWHFVKEYPEYVAYITPMFFCDDWLNLYLDNFKMHTDSDTDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQCHLVFDRNMKNSVYNIFDEVSDSKFPGFNKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDVCDDFEGLCQRNLAANTGMNFFDFLTFMSYFTLANLVLLSYVNGRYGSTTQSSSIISQHLSMNLGCIKKIASEMKHVHALEGNHDCVVDMIKAYEDPRFSKLCMHVGRTYIMIHEQSYLSFDIKNASLGDLVDLNVMKAHTSSQIYKPEDLIKFMDDAVAELSDCYIELSVLSVT* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0789 490 Pfam Cupin-like domain 21 286 IPR041667 -
Apr1g0789 490 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 6 477 - -
Apr1g0789 490 Gene3D Cupin 3 287 - -
Apr1g0789 490 ProSiteProfiles JmjC domain profile. 123 303 IPR003347 -
Apr1g0789 490 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 6 477 - -
Apr1g0789 490 SUPERFAMILY Clavaminate synthase-like 7 313 - -
Apr1g0789 490 SMART cupin_9 145 303 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0789 Apr-Chr1 9701917 9708701 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0789 7 295 Glycosyltransferase AT1G78280 23.179 2.43e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Apr1g0789 Cupin_8 1e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0789 - - gmx:100803814 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0789 1 9701917 9708701 Apr1g0789 1 9701917 9708701 ECH