Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0781 ATGGCATCATCCAGCTCTTACAATTCTCCATGTGCTGCTTGCAAATTCTTGAGGAGGAAATGCCTTCCAGGGTGCATCTTCGCACCGTATTTCCCACCAGAAGAACCCCAGAAATTCGCCAACGTGCACAAGATCTTTGGTGCCAGCAATGTGACTAAGCTCCTCAACGAACTCCTCCCTCACCAAAGGGAACATGCAGTGACTTCCCTTGCTTATGAAGCAGAGGCACGTGTGAGAGACCCAGTTTATGGCTGTGTTGGTGACATCTCTGTCCTGCAAAGGCAAGTTCAAAGGCTTCAAAGGGAGCTTGATTCAGCCAATGCTGATCTCCTTCGCTATGCTTGCAATGAAATCCCTCCACCATCTCTTCCTGTGCCACCAGCAATGACAACTTCAATTCAACAAATGCCACAAAGGTCTTTCAGTGCAAGATTTGGTAATGAAGGAAGTGGGTTTTATAGGCCTTCTCCTACCACTTATTCTTTTCCTTATTCTCTTCCTTGGACTGATACCCCTTCTGATGATAACAATGAGAGAGGATGTGGAGGAGGAGGTAATTTGTGA 564 0.4663 MASSSSYNSPCAACKFLRRKCLPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREHAVTSLAYEAEARVRDPVYGCVGDISVLQRQVQRLQRELDSANADLLRYACNEIPPPSLPVPPAMTTSIQQMPQRSFSARFGNEGSGFYRPSPTTYSFPYSLPWTDTPSDDNNERGCGGGGNL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0781 187 PANTHER ELONGATED PETIOLULE 1 1 183 - -
Apr1g0781 187 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Apr1g0781 187 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Apr1g0781 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 183 - -
Apr1g0781 187 Coils Coil 89 116 - -
Apr1g0781 187 MobiDBLite consensus disorder prediction 166 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0781 Apr-Chr1 9552953 9553516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0781 1 114 AS2 family AT5G63090 88.696 4.65e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr1g0781 LOB 5.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0781 - - gmx:100799774 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0781 1 9552953 9553516 Apr9g3134 9 38177757 38178320 ECH
Apr1g0781 1 9552953 9553516 Apr1g0781 1 9552953 9553516 ECH
Apr9g3134 9 38177757 38178320 Apr1g0781 1 9552953 9553516 PCT