Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0776 ATGGGTCGCCATTCCTGTTGTTTAAAGCAAAAACTAAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACAAGATTTGGTGTTGGGTGCTGGAGTTCAGTTCCCAAACAAGCTGGACTACAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTAAGGCCTGATTTGAAGAGAGGGATGTTCTCTCAACAGGAGGAGGATCTTATCATTAGTCTCCATGAAGTTCTAGGAAATAGGTGGGCTCAAATTGCAGCACAGTTGCCAGGGAGAACAGATAATGAGATTAAAAATTTTTGGAATTCATGTTTGAAGAAGAAGCTAATGAAGCAAGGGATTGACCCTGCGACACACAAGCCCCTCTTAAACAATGAAGACCATCAAATAAAGGAAGAGAAAGAAAGCACCGATACACCACCACCTATGCTAATGCCAGTGTCTCAAGGACTTTTAGCTTCCTGCCAGGGTTCACCACTTGTGATGAACAATTCAAAATATTATGATGGTGGGTTAACTGTAAAAGAAGCTTCAAGTGAAGTTTTCATGAGCAAGCCTGCATTGGACCCTTTGTCCTACTTTGAATTCCAAATGGGTGTTGCTGATCAGTGTGGTTATGATTCAAGCCTTAACCAGGCGGGAACCAATTCAAGCTATGGATTTTCTTCAATGCCATGCCTAGATAGTTCTGACCATGGACACGTGTCGGTGGGAGAGTTTTCAGATAACAACTCATGTTCTAAAATCAGTTCTTTTTTAATGAAGGAAAGTTCCAGCAATAGCTCAAGCATGAGTGTTTATGCAGGGTGTCAAATGAGTAGCATGATGGAAAATGCTGGGTTTTCATGGGATGGTGAGAACAAGTTGGATCCTTTGTTACAGTTTCAAGTCAATGCAGTAAAATCTGAAGAGTTCAAGACAGGTTCGTGGCAAGAAGCACAGATGCTGAGTCAGAACTCAATAGACTTCACTAACTATTCGTTAATGTCACTATCAGAGGATCTAACGGGAGCAAATTTTGATGTGTTCCAGCAGATTTGA 1062 0.4105 MGRHSCCLKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLMKQGIDPATHKPLLNNEDHQIKEEKESTDTPPPMLMPVSQGLLASCQGSPLVMNNSKYYDGGLTVKEASSEVFMSKPALDPLSYFEFQMGVADQCGYDSSLNQAGTNSSYGFSSMPCLDSSDHGHVSVGEFSDNNSCSKISSFLMKESSSNSSSMSVYAGCQMSSMMENAGFSWDGENKLDPLLQFQVNAVKSEEFKTGSWQEAQMLSQNSIDFTNYSLMSLSEDLTGANFDVFQQI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0776 353 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g0776 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr1g0776 353 MobiDBLite consensus disorder prediction 123 148 - -
Apr1g0776 353 Gene3D - 69 145 - -
Apr1g0776 353 CDD SANT 70 109 IPR001005 -
Apr1g0776 353 CDD SANT 17 61 IPR001005 -
Apr1g0776 353 PANTHER MYB DOMAIN PROTEIN 55 1 349 - -
Apr1g0776 353 SMART sant 13 63 IPR001005 -
Apr1g0776 353 SMART sant 66 114 IPR001005 -
Apr1g0776 353 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Apr1g0776 353 MobiDBLite consensus disorder prediction 128 145 - -
Apr1g0776 353 PANTHER MYB TRANSCRIPTION FACTOR 1 349 - -
Apr1g0776 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr1g0776 353 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr1g0776 353 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Apr1g0776 353 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr1g0776 353 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0776 Apr-Chr1 9415597 9417236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0776 1 133 MYB Transcription Factor Family AT4G01680 84.211 4.36e-81 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0776 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0776 K09422 - gmx:100799243 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0776 1 9415597 9417236 Apr1g0776 1 9415597 9417236 ECH
Apr9g3137 9 38216720 38218073 Apr1g0776 1 9415597 9417236 PCT