Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0738 ATGGAGGATTCTTCAGCTGGTGAAGACACCAAGACTTGTCCTCGTGGTCACTGGAGACCCGCTGAGGATGAAAAGCTAAGACAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATTGCCGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCCGATTAAGGTGGTTCAATCAGCTTGACCCCAGAATTAATAGAAGACCATTCACGGAAGAGGAAGAAGAGAGGCTTCTTGCGGCGCATCGCATTCACGGGAACAAGTGGGCACTCATAGCGAGGCTTTTCCCGGGTCGAACTGATAATGCTGTGAAGAATCACTGGCATGTTATAATGGCGAGAAAGCAAAGGGAACAATCTAAGTTATGTGGGAAGAGAAGCTTCCAAGACGTTTACAATGATTCCAACAGTTCCTCGTTCACCGAGAAAAGACCATCACAACAACCTCAAGACCTATTGTTTAGTACGAGATTTGGGTTAGAGAATGGAAGATTCTTTGACTTTCGGAACCTCGATAAAGATAATAATAGGATAGTTGCAGATACTCCCTCTAGTTCTCTTGCCTCGTGGAATTTTGCATCTGTGCCAACATCTACAAACAATTCTTCTGTAGTGGATTCACTTAGAAAAGGAGGGAGAGACTATGTCAACAGTTCTTCTTGTTCTTCTAATATTTACATCTCAGAATGTTCCAGAAGCTCAGATAGATCATTTCTTTACAGAATTTATCCAAATCCTGCATTCTCGCTTCCCAACTACAAAAGGGTTGTTCCAAGTCCTTTTAGATTCCTCGGTTCTAATGATGATGGAAAGATAAAGAGGGACTTGATGAGTTTCTGTGATAACTCATCCACATTCACCAAGTTGAGGGCTTCCAATGCGGAGAAAGATCATCAGCAAAAAGATGACGATGAAACCAATATTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATAA 981 0.42 MEDSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGKRSFQDVYNDSNSSSFTEKRPSQQPQDLLFSTRFGLENGRFFDFRNLDKDNNRIVADTPSSSLASWNFASVPTSTNNSSVVDSLRKGGRDYVNSSSCSSNIYISECSRSSDRSFLYRIYPNPAFSLPNYKRVVPSPFRFLGSNDDGKIKRDLMSFCDNSSTFTKLRASNAEKDHQQKDDDETNIEHKEVPFIDFLGVGVSSS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0738 326 Pfam Myb-like DNA-binding domain 18 78 - -
Apr1g0738 326 PANTHER TRANSCRIPTION FACTOR MYB56 6 324 - -
Apr1g0738 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr1g0738 326 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Apr1g0738 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Apr1g0738 326 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Apr1g0738 326 Gene3D - 15 66 - -
Apr1g0738 326 PANTHER MYB PROTEIN-RELATED 6 324 - -
Apr1g0738 326 MobiDBLite consensus disorder prediction 1 21 - -
Apr1g0738 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr1g0738 326 CDD SANT 18 59 IPR001005 -
Apr1g0738 326 SMART sant 66 114 IPR001005 -
Apr1g0738 326 SMART sant 14 63 IPR001005 -
Apr1g0738 326 CDD SANT 69 109 IPR001005 -
Apr1g0738 326 Gene3D - 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0738 Apr-Chr1 8810196 8811913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0738 13 326 MYB Transcription Factor Family AT1G17950 41.905 3.09e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr1g0738 Myb_DNA-bind_6 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0738 K09422 - gmx:100802283 500.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0738 1 8810196 8811913 Apr9g0744 9 13239462 13241351 PCT