Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0717 ATGTCAAGCAATGCATTAACTCTTTTTATCTTGTTTCTTAATATCTCCTTGTTTCCATCCATTCCTGCTCTGAACCAGGAAGGCCTCTCTCTACTTTCATGGCTTTCAACTTTCAATTCCTCCAACTCTGCTATTGCCTTCTCTTCATGGGATCCAAACCACAAAAGTCCTTGCAGATGGGATTATATAACATGTTCCAAAGAAGGGTTTGTTGCAGAGATCATAATAACATCCATTGATCTACGTAGTAGCTTCCCTACACAGTTACTTTCTTTTAACCACCTCACCACTCTTGTCATCTCAAATGGAAATCTCACTGGTGAAATTCCAAATTCAGTGGGAAACTTATCCTCTTTGGTTACTTTGGACCTTAGCTTCAATGCTTTATCAGGAACCATTCCAGAAGAAATAGGAATGCTATCTAAGCTGAAGTGGTTATCATTGAATTCAAATTCCTTGCATGGTGGAATTCCAACCACAATTGGAAACTGTTCAAAGCTTCAGCAGCTGGCACTTTTTGACAACCAGCTCTCTGGTATGATACCTGGAGAAATAGGCCAGTTGAGTGCTCTTGAAACACTAAGAGCAGGTGGAAATCCAGGTATATATGGTGAAATTCCAATGCAGATATCAGGCTGCAAGGCTTTAATTTTTCTGGGACTTGCAGTTACTGGGATTTCTGGGCAGATTCCACCAAGCATAGGAGAACTTAAGAATCTCAAGACACTTTCAGTCTACACAGCACATCTCACAGGTCACATCCCAGCAGAGATTCAAAACTGCTCAGCCTTGGAGGATTTGTTTCTGTATGAAAACCAGCTTTCTGGAAGTATTCCTTATGAATTAGGTTCCATGCAAAGCCTCAGGAGGGTTTTGCTGTGGCAGAACAATTTGACTGGAACCATTCCAGAAAGTCTTGGAAACTGTACAAATCTTGAGGTTATAGATTTCTCTTTGAATTCTCTGGGTGGTCAGATACCTTCGACTCTCAGTAGTCTACTCTTATTGGAGGAGTTTCTCTTGTCTGATAATGATATTTATGGAGAAATGCCTTCCTATATTGGAAACTTTTCCAGGCTGAAGCAACTTGAATTGGATAACAACAAATTCTCTGGGGAGATTCCACCTGTTATGGGGCAACTGAAGGAACTCACCCTCTTCTATGCCTGGCAGAATCAACTGTATGGAAGCATACCAACAGAACTATCCAACTGTGAGAAACTTGAAGCACTTGATCTTTCTCACAATTCCCTCACTGGTTCGGTTCCAAATTTGCTCTTTCATCTACAGAATTTAACTCAGTTGTTGCTTATATCAAACAGACTTTCAGGTCAAATTCCACCAGATATTGGCAGTTGCACCAGCTTGATCAGGTTAAGGCTAGGATCAAACAACTTAACTGGTCAAATTCCACAAGAAATAGGTCTTTTAAGCAGTTTGAGCTTTCTTGAGTTGTCAGATAATCTTCTCAGTGGAGATATTCCCTCTGAGATAGGTAACTGTGCTCATCTAGAAATGCTTAACTTGCACAGCAATGAGCTGCAAGGAACCATTCCTTTCTCATTGAAATTCCTGTTGAGTCTTAATGTCTTAGATCTTTCTGCAAACAAAATAACTGGAAGCATTCCTGAGAATTTGGGCAAGCTTACATCTCTAAATAAGTTAATTCTAAGTGGAAACCTTATCACAGGTGTGATCCCTAAGACACTGGGCCTTTGTAAGGATTTGCAGTTGCTAGATATAAGTAATAATAGGATCACTGGTTCTATTCCTGATGACATTGGTTATTTGCAAGGGTTAGATATCCTCTTGAACTTGAGTTGGAATTTTCTTACTGGCCCCATTCCCGAGACCTTCTCAAATCTCTCAAAACTATCCATCTTGGATCTTTCTCACAACAAGCTCACAGGTACCCTCGGAGTTCTGGGTAGTCTTGACAATCTTGTGTCTCTGAATGTCTCTTACAATAGCTTTTCTGGTTCTCTTCCTGACACAAAGTTCTTCCAGGATCTACCTGCTGTTGCATTTGCAGGTAACCCTGACCTTTGCATTAGCAAGTGTCATGCAAGTGGAAATGGCCAAGGCATCAAGTCAATTAGAAATGTTATTATCTACACTTTCCTTGGGATTATTTTAATTTCTATTTTTGTCACTTGTGGAGTAATTTTAACTCTCAGAATTCAAGGGGCCAAGTTTGGGAGGAATTGTGATGAAGGTGGTGAAATGGAATGGGCTTTTACTCCATTCCAAAAGCTCAACTTCTCCATTAATGACATAGTCACAAAGCTGTCAGATTCAAACATTGTGGGAAAGGGTTGTTCAGGGATTGTTTATCGTGTAGAGACGCCAATGAAACAGGTTATTGCAGTGAAGAAGCTATGGCCAATAAAGAAAGAAGAGCCACCAGAGAGAGATCTGTTCACTGCAGAGGTTCAGACCCTGGGATCAATAAGGCATAAAAATATAGTGAGACTTTTAGGATGCTGCGACAATGGAAGAACTAGATTGCTTTTGTTTGATTATATATGTAATGGTAGTTTATTTGGATTACTCCATGAAAAGAGATTATTCTTGGATTGGGATGCAAGGTATAAGATCATACTGGGAGCAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATAGTCCACCGAGACATTAAGGCTAACAACATCTTGGTAGGTACACAGTTTGAAGCTTATCTTGCAGATTTTGGCCTTGCAAAACTTGTGAGTTCCTCGGAGTGTTCAGGAGCCTCTCATATAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATACGGATACAGTTTAAGGATCACAGAAAAGAGTGACGTGTACAGTTATGGTGTTGTGCTCCTTGAGATCTTAACAGGGATGGAACCAACTGATCACAGTATTCCAGAGGGTGCCCACATTGTCAGCTGGGTTAGCAATGAAATTCGAGAGAAGAAAAGAGAATTTACATCTATCCTTGACCAGCAACTAGTTTTGCAGTGTGGAACAAGAACCTCTGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTTTGTGTGAATTCATCCCCAGAAGAAAGACCTACTATGAAAGATGTAACAGCAATGCTCAAGGAGATCCGGCATGAAAATGAAGATTTTGAGAAACCAAATTTTCTCCATAAAGGCATGGTTACCAATCCAAAAGCAGCAGTTCACTGTTCAAGTTTCTCTAGATCATGTGAACATTTAATAGAATCACCATCTTCTTCTTCTTCATAG 3264 0.4032 MSSNALTLFILFLNISLFPSIPALNQEGLSLLSWLSTFNSSNSAIAFSSWDPNHKSPCRWDYITCSKEGFVAEIIITSIDLRSSFPTQLLSFNHLTTLVISNGNLTGEIPNSVGNLSSLVTLDLSFNALSGTIPEEIGMLSKLKWLSLNSNSLHGGIPTTIGNCSKLQQLALFDNQLSGMIPGEIGQLSALETLRAGGNPGIYGEIPMQISGCKALIFLGLAVTGISGQIPPSIGELKNLKTLSVYTAHLTGHIPAEIQNCSALEDLFLYENQLSGSIPYELGSMQSLRRVLLWQNNLTGTIPESLGNCTNLEVIDFSLNSLGGQIPSTLSSLLLLEEFLLSDNDIYGEMPSYIGNFSRLKQLELDNNKFSGEIPPVMGQLKELTLFYAWQNQLYGSIPTELSNCEKLEALDLSHNSLTGSVPNLLFHLQNLTQLLLISNRLSGQIPPDIGSCTSLIRLRLGSNNLTGQIPQEIGLLSSLSFLELSDNLLSGDIPSEIGNCAHLEMLNLHSNELQGTIPFSLKFLLSLNVLDLSANKITGSIPENLGKLTSLNKLILSGNLITGVIPKTLGLCKDLQLLDISNNRITGSIPDDIGYLQGLDILLNLSWNFLTGPIPETFSNLSKLSILDLSHNKLTGTLGVLGSLDNLVSLNVSYNSFSGSLPDTKFFQDLPAVAFAGNPDLCISKCHASGNGQGIKSIRNVIIYTFLGIILISIFVTCGVILTLRIQGAKFGRNCDEGGEMEWAFTPFQKLNFSINDIVTKLSDSNIVGKGCSGIVYRVETPMKQVIAVKKLWPIKKEEPPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGRTRLLLFDYICNGSLFGLLHEKRLFLDWDARYKIILGAAHGLEYLHHDCIPPIVHRDIKANNILVGTQFEAYLADFGLAKLVSSSECSGASHIVAGSYGYIAPEYGYSLRITEKSDVYSYGVVLLEILTGMEPTDHSIPEGAHIVSWVSNEIREKKREFTSILDQQLVLQCGTRTSEMLQVLGVALLCVNSSPEERPTMKDVTAMLKEIRHENEDFEKPNFLHKGMVTNPKAAVHCSSFSRSCEHLIESPSSSSS* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0717 1087 ProSitePatterns Protein kinases ATP-binding region signature. 769 797 IPR017441 GO:0005524
Apr1g0717 1087 SMART serkin_6 763 1038 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0717 1087 Pfam Protein kinase domain 766 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0717 1087 PRINTS Leucine-rich repeat signature 408 421 - -
Apr1g0717 1087 PRINTS Leucine-rich repeat signature 622 635 - -
Apr1g0717 1087 SMART LRR_sd22_2 573 594 - -
Apr1g0717 1087 SMART LRR_sd22_2 405 434 - -
Apr1g0717 1087 SMART LRR_sd22_2 525 548 - -
Apr1g0717 1087 SMART LRR_sd22_2 622 650 - -
Apr1g0717 1087 SMART LRR_sd22_2 116 139 - -
Apr1g0717 1087 SMART LRR_sd22_2 140 166 - -
Apr1g0717 1087 SMART LRR_sd22_2 477 503 - -
Apr1g0717 1087 SUPERFAMILY Protein kinase-like (PK-like) 750 1048 IPR011009 -
Apr1g0717 1087 Pfam Leucine Rich Repeat 407 428 IPR001611 GO:0005515
Apr1g0717 1087 Gene3D Ribonuclease Inhibitor 186 400 IPR032675 -
Apr1g0717 1087 Gene3D Transferase(Phosphotransferase) domain 1 842 1059 - -
Apr1g0717 1087 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Apr1g0717 1087 SUPERFAMILY RNI-like 293 662 - -
Apr1g0717 1087 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Apr1g0717 1087 ProSiteProfiles Leucine-rich repeat profile. 527 550 IPR001611 GO:0005515
Apr1g0717 1087 ProSiteProfiles Protein kinase domain profile. 763 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0717 1087 SMART LRR_typ_2 285 309 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 525 548 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 357 381 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 140 164 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 549 572 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 429 453 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 645 678 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 405 428 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 116 139 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 477 501 IPR003591 -
Apr1g0717 1087 SMART LRR_typ_2 622 644 IPR003591 -
Apr1g0717 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 885 897 IPR008271 GO:0004672|GO:0006468
Apr1g0717 1087 PANTHER LRR RECEPTOR-LIKE KINASE 3 1059 - -
Apr1g0717 1087 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Apr1g0717 1087 Pfam Leucine rich repeat 604 657 IPR001611 GO:0005515
Apr1g0717 1087 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Apr1g0717 1087 SUPERFAMILY RNI-like 81 395 - -
Apr1g0717 1087 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Apr1g0717 1087 Gene3D Phosphorylase Kinase; domain 1 736 841 - -
Apr1g0717 1087 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1059 - -
Apr1g0717 1087 Gene3D Ribonuclease Inhibitor 401 694 IPR032675 -
Apr1g0717 1087 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Apr1g0717 1087 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0717 Apr-Chr1 8569052 8573060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0717 23 1078 Receptor kinase-like Gene Family AT5G56040 47.102 0.0 934
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Apr1g0717 Pkinase 9.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0717 - - gmx:100807225 1879.76