Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0708 ATGAGACACATAATGGAACCCAGCATCCTATGCAAGCACACAGTGCATCACAGCGTTGTCAAGAAACTCCTTTCCCCCAAGAAGACTCTAACTAATTCAATAGAACGTAGAGTAGTCAGGATATCCGTCTCTGATCCAGACGCCACCGACTCTTCCAGCGACGAAGAATCACACTGCTTCCTCCGCCACAGAATGAAGCGCTACGTCAATCAGATTGAAATCGAAACCGCCGCCAAAAACTCCGCCGCTGCCCCTCGTAAGAGACCCGCCGGAGATTCCTCTTCCTCCCGGCGCCCTGCCAAGGCCCTCGCCGCCACCAATGGGAGGAAGTTCCGCGGCGTTCGCCAGAGACCCTGGGGAAAATGGGCGGCGGAGATTCGAGATCCGTCGAGGAGGGTGCGCCTCTGGTTGGGCACCTACGACACTGCAGAAGAAGCCGCCATGGTATACGACAATGCCGCTATCAAGCTTCGTGGCCCTGACGCTTTAACAAACTTCATCACGCCGCCGCAGAGGGAAAAATCATCGCCGGAGGAGGCTGTTTCCGAGCAAAAGCCAGAAATGAAAGTCGAGGTCACCGCGGAAGCTTCGGCGTCCGGTTACGATTCCGGTGACGAGCAGTGTCACAACCTTTCCTCTCCCACTTCGGTGCTCCAATTCCGGAGCAACTCGAGCGAGGAGACAACGGAATCCCAGAAACCGGTGGAGCCGGAGGAAACGAGCGAAGCGGAGGAAACGTGGGAAGTGTTCAGAGAGTGCCAAGGTGAGACGAGTCTCTTCGATGAGACTGGGGAGTTTTTCCCTCTGGAAATGCCTGCGTGTGACGATCTTTTCAATTTCCAAGCCCCAGAGTACCCTCTTTTGTTCGGAGATGAAGCGCCTCAGATGTTGGGCGAAACAAGTCCGCTTTATTTAGACGAAGATTTCAGTGACAACATTGTTCTGGCCGATTCCCTCATAGATTTCGACAAAGCCTGTTCTCCATCGACGTTGTGCCAGGTGGACGATTACTTCCAAGATATTTTGTTAGGCTCCGATCCTTTGGTGGCTCTCTGA 1056 0.5398 MRHIMEPSILCKHTVHHSVVKKLLSPKKTLTNSIERRVVRISVSDPDATDSSSDEESHCFLRHRMKRYVNQIEIETAAKNSAAAPRKRPAGDSSSSRRPAKALAATNGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPQREKSSPEEAVSEQKPEMKVEVTAEASASGYDSGDEQCHNLSSPTSVLQFRSNSSEETTESQKPVEPEETSEAEETWEVFRECQGETSLFDETGEFFPLEMPACDDLFNFQAPEYPLLFGDEAPQMLGETSPLYLDEDFSDNIVLADSLIDFDKACSPSTLCQVDDYFQDILLGSDPLVAL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0708 351 Pfam AP2 domain 110 159 IPR001471 GO:0003700|GO:0006355
Apr1g0708 351 MobiDBLite consensus disorder prediction 77 111 - -
Apr1g0708 351 MobiDBLite consensus disorder prediction 203 230 - -
Apr1g0708 351 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 10 342 - -
Apr1g0708 351 MobiDBLite consensus disorder prediction 166 245 - -
Apr1g0708 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 342 - -
Apr1g0708 351 MobiDBLite consensus disorder prediction 176 190 - -
Apr1g0708 351 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Apr1g0708 351 SUPERFAMILY DNA-binding domain 110 166 IPR016177 GO:0003677
Apr1g0708 351 Gene3D AP2/ERF domain 109 168 IPR036955 GO:0003700|GO:0006355
Apr1g0708 351 SMART rav1_2 110 173 IPR001471 GO:0003700|GO:0006355
Apr1g0708 351 MobiDBLite consensus disorder prediction 231 245 - -
Apr1g0708 351 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Apr1g0708 351 PRINTS Ethylene responsive element binding protein signature 133 149 IPR001471 GO:0003700|GO:0006355
Apr1g0708 351 ProSiteProfiles AP2/ERF domain profile. 110 167 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0708 Apr-Chr1 8469255 8470467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0708 11 318 AP2-EREBP Transcription Factor Family AT4G27950 41.538 1.97e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr1g0708 AP2 2.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0708 - - gmx:100807598 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0708 1 8469255 8470467 Apr1g0708 1 8469255 8470467 ECH