Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0706 ATGGATGAAAGTTTATCTGATATTTTTGAAGACAAAGAGTTCGGCGGGGACGATCTCTTTGCCATCTTGGAGAGCCTAGAATCAGATTTTACTGATTTCCCTCTCATTAACGAAAATGTTACTATCTCAATTTCCAAAGACATGAACGAGGATGTCTCAAGGTTGGTGTCCCAAAAGTCAACCTCTTCAAGTGCTCCACTAGATTCCGAAACCGAACCTGAAACCTCACCCAAAACCAAGAGACAAAAACTTACCCCTACTTCCTCGGAGGAAGCAAACCCAGATGGACAACAAAGGATGTCCCACATTACCGTGGAACGCAACCGAAGGAAGCAAATGAATGAGCACTTGTCCGTGTTGAGATCACTCATGCCTTGCTTTTATGTCAAAAGAGGAGATCAAGCATCGATAATTGGAGGTGTGGTTGATTACATAAACGAGTTGCAGCAGGTGCTCCAAGCCCTGGAGGCGAAGAAGCAAAGAAAAGTTTACAGCGAAGTACTAAGCCCTAGGCTTGTTTCAAGCCCAAGGCCTTCCCCACTTAGTCCCCGAAAACCACCTCTTAGCCCAAGACTAAACTTACCCATTAGTCCAAGGACACCACAACCACAACCAGGTAGCCCTTATAGGCCTAGGTTACAACAAGGCTACAATAATATTATTTCACCAATTCTAGACCCATCTCCTACTTCTTCAGCTTCCTCCATCAACGACAACATCAATGAGCTCGTTGCCAATTCCAAGTCCCCTGCTGCTGACGTGGAGGTCAAGTTTTCAGGTCCACATGTTCTTTTGAAAACGGTGTCGCACAGAATTCCCGGCCAAGCTCTCAAGATCATAATGGCTCTTGAAGATCTTGCGCTCGAAATTCTCCATGTCAACATTAGCTGTGCTTCTGATGATACCATGTTAAACTCATTCACTATCAAGATTGGGATTGAATGTCAACTGAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCTAA 996 0.4468 MDESLSDIFEDKEFGGDDLFAILESLESDFTDFPLINENVTISISKDMNEDVSRLVSQKSTSSSAPLDSETEPETSPKTKRQKLTPTSSEEANPDGQQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQVLQALEAKKQRKVYSEVLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPQPGSPYRPRLQQGYNNIISPILDPSPTSSASSINDNINELVANSKSPAADVEVKFSGPHVLLKTVSHRIPGQALKIIMALEDLALEILHVNISCASDDTMLNSFTIKIGIECQLSAEELAQQIQQTFC* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0706 331 MobiDBLite consensus disorder prediction 80 101 - -
Apr1g0706 331 PANTHER - 7 331 - -
Apr1g0706 331 MobiDBLite consensus disorder prediction 53 72 - -
Apr1g0706 331 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Apr1g0706 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Apr1g0706 331 Gene3D - 88 162 IPR036638 GO:0046983
Apr1g0706 331 MobiDBLite consensus disorder prediction 170 213 - -
Apr1g0706 331 MobiDBLite consensus disorder prediction 176 208 - -
Apr1g0706 331 CDD bHLH_AtFAMA_like 100 171 - -
Apr1g0706 331 PANTHER TRANSCRIPTION FACTOR FAMA 7 331 IPR044283 GO:0003700|GO:0010052
Apr1g0706 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 171 IPR036638 GO:0046983
Apr1g0706 331 MobiDBLite consensus disorder prediction 53 101 - -
Apr1g0706 331 SMART finulus 103 154 IPR011598 GO:0046983
Apr1g0706 331 Coils Coil 141 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0706 Apr-Chr1 8423092 8425155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0706 1 311 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 52.066 4.49e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr1g0706 HLH 7.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0706 K20558 - gmx:100777437 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0706 1 8423092 8425155 Apr1g0706 1 8423092 8425155 ECH