Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0705 ATGGACAACAAAGGAGATCCAAAGAGCATCATATATGAGTTACTACAAGGTTTGGAGTTGGCAAGGCAACTCCAAGTGTATCTCCACATGCCTTCTTCATCCCAAGAAACACGTGAGCTCTTGATCCAAAAGATCATATCCACATTTGAAAAGGCTCTTGAAATGGTAAACTGGAAAGGGCCAGTAGGTGAGTCATCTCAACAGCCCTCAGGGGTTGCAATCCGAATGTCAGACTCACCTTTGAGTGGTAGCCCCCGCAGTGAAGACTCTGATAAAGATTTGAAGGACCAGGACCATAATATTTCCAAAAAGAGAAACACTTTGCCAAGATGGACCAAACAGATTCGGGTTAAACCTGGAGTGGGAGTGGAAGGGCCCCTTGATGATGGATATAGTTGGAGAAAATATGGCCAGAAAGACATCCTTGGAGCCATGTACCCGAGGGGCTACTACAGATGCACCCACAGAAATGTTCAAGGGTGCTTGGCCACCAAGCAAGTGCAAAGATCTGATGAAGATCCCACTGTGTTTGAAATCACATACAGAGGAAAGCACACTTGCACAGTGGCCAGCAACGTGGGTTCTTCATCAAGTCCACTAGAAAACCAAGAACCAAGTTTGAACACAAACCCTCAGGAGCAGCAGCAGCAGAATGTCCTGCAAAGACTTGAGCAGCAACCAAATGAAGTACTTCTGAGCCTCCGTGCAGGCCTGAGAGTTCAGACAGAGAACTTAGATTCCCCTGGCCAATCATTTGCTCCATTCCATTTCCCTTCAACTTCAAACATCAAAATCGAAAACCAAGTTTTCCCATCCCCTATCATTGAAAACAACTATGCTGAGAACTTCACTTCTCCTTCCTACATGTCCCCTAATACATCAGGAATAAGCCACTTTTCGGTGTCTCCAAGTGGGGTCCACACATTCGAGGGACACCCAAATTTGGCAACTTCTGCTTCTCAGATCAATGACATGATCCCAGCTGCTACATCAGCTGCAAACTCACCAACCGTCTTTCCTTTTGACCACTTTGAGTTTGATGGCCATAACTTCACATTCGATAACCCACGATTTTTCTCGTGA 1083 0.4571 MDNKGDPKSIIYELLQGLELARQLQVYLHMPSSSQETRELLIQKIISTFEKALEMVNWKGPVGESSQQPSGVAIRMSDSPLSGSPRSEDSDKDLKDQDHNISKKRNTLPRWTKQIRVKPGVGVEGPLDDGYSWRKYGQKDILGAMYPRGYYRCTHRNVQGCLATKQVQRSDEDPTVFEITYRGKHTCTVASNVGSSSSPLENQEPSLNTNPQEQQQQNVLQRLEQQPNEVLLSLRAGLRVQTENLDSPGQSFAPFHFPSTSNIKIENQVFPSPIIENNYAENFTSPSYMSPNTSGISHFSVSPSGVHTFEGHPNLATSASQINDMIPAATSAANSPTVFPFDHFEFDGHNFTFDNPRFFS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0705 360 MobiDBLite consensus disorder prediction 60 113 - -
Apr1g0705 360 Pfam WRKY DNA -binding domain 128 187 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0705 360 SUPERFAMILY WRKY DNA-binding domain 126 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0705 360 MobiDBLite consensus disorder prediction 61 84 - -
Apr1g0705 360 MobiDBLite consensus disorder prediction 191 218 - -
Apr1g0705 360 MobiDBLite consensus disorder prediction 85 105 - -
Apr1g0705 360 ProSiteProfiles WRKY domain profile. 122 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr1g0705 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED 1 358 - -
Apr1g0705 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 358 IPR044810 GO:0003700
Apr1g0705 360 Gene3D WRKY domain 121 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr1g0705 360 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0705 Apr-Chr1 8417409 8419187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0705 14 206 WRKY Transcription Factor Family AT5G24110 46.114 2.68e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr1g0705 WRKY 6.9e-27 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1234 10 24728958 24731797 Apr1g0705 1 8417409 8419187 ECH
Apr4g0912 4 7362135 7364807 Apr1g0705 1 8417409 8419187 ECH
Apr7g0532 7 11786912 11788258 Apr1g0705 1 8417409 8419187 ECH
Apr2g1266 2 18886565 18888431 Apr1g0705 1 8417409 8419187 ECH
Apr1g0705 1 8417409 8419187 Apr1g0705 1 8417409 8419187 ECH