Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0688 ATGGTGATTCGATTCCCTTTCGGAATCAAAGGACGGCATCCACAACAGTTTGGCTATCCTGGCTTTGATTTATTTTGTTCATCAAGTAACGAAACTATGATTGAACTCCCAAAATCAGTGATGCTCAAAGTCAATAGCATTGATTACAAACAGCAAACTATTGCACTATCTGATTCATACGGTTGCCTTTCTAAGCAGTTAGTGAACCTCAATCTATCAGCTTCGAATTTTCAGTTCATGCCCCACTACAATGCATACGGTGACTATATCATTTTCAATTGTTCACTGTCACACACGAAAAGATATTTATTGGACTATATGAATTCTGTTCCGTGCCTAAGTACTTCAACCTCTAACGCATATGCTGTTTCATCTGATAATACGATCGAGTACTTGCCCCTGTCATTTTGCACCAAACTGTTTGATATTTCATTCGTCCCTATTGCTTTCTTTCGTGAGAACGTTCATGTGATTCTTTTGACATGGTCTGAGCCAAACTGTAAACAATGCGAGTCAGAAGGGAACGTATGTGGGTCGAAGAATAATACTACCAATCATGAATTACATTGCTTCCCCAATCACAAAGGATTAGTCCTAGGATCGTTTCTTCTTGTCCTGTTGAGTGGTGCTGTCTTTCACATTTACGAGGCTTACAAACTGCAGAAAGAAAAGCAAGCTATTATTGAGAAATTTTTAGAAGACTATAAAGCACTTAAGCCTACCAGATACTCTTATGTTGAAATTAAGAGAATCACCAACAATTTTAAGGACAAGTTAGGAGAAGGAGCCTATGGAACGGTGTTTAAAGGAAGCATTTCCAAAGATTTTATGGTTGCTGTGAAAATCCTGAATAATTCCCAAGGAAATGGGGAAGAGTTCGTTAATGAAGTAGCTACAATGGGTAGAATTCACCATGTTAACATTGCCCGCTTGGTCGGTTTTTGTGCCGATGGCTTTAGAAGAGCTCTTGTTTATGAGTTCTTACCGAATGGTTCACTGCAGAAGTTCATAAATTCACCAGACAACAGGCAAAACTTCCTTGGTTGGAAAAGGATGCAGAACATTGCTTTAGGCATAGCCAAAGGAATTGAATATCTTCACCAAGGTTGTGATCAGCGCATTCTCCATTTTGACATTAAGCCTCAAAATATGTTACTAGACCACGACTTTACTCCAAAAATATGTGACTTTGGTCTAGCCAAATTGTGTTCAAGGGAGCAGAGCATTGTGTCAATGACCACAGCTAGAGGTACTTTGGGGTACATAGCTCCTGAAGTTTTCTCACGAAACTTTGGAAACGTGTCATACAAGGCAGATGTTTATAGCTATGGAATGATGCTGCTTGAAACAATAGGAGGGAGGAAGATCACTGAGGACCTAGAGGAAAACACTAGCCATGTTTACTACCCAGAATGGATTCACAATCTTTTAGAAGAACGTGAGGAAAAGAGAATTCACATAGATGATGAAGGGGATGCAAAAATTGCAAGGAAACTAGCAATTGTGGGACTTTGGTGCATCCAGTGGCATGCTATGGATAGACCATCCATGCAAGTGGTTGTACAAATGTTAGAGGGAGACATATACAGAACCCCAATACCTCCTAATCCTTTTGCGTCTACAGGATCAAGGAGTAAAAGTACAAATTTGGGTGTAGCTGCAGACAACTAA 1671 0.398 MVIRFPFGIKGRHPQQFGYPGFDLFCSSSNETMIELPKSVMLKVNSIDYKQQTIALSDSYGCLSKQLVNLNLSASNFQFMPHYNAYGDYIIFNCSLSHTKRYLLDYMNSVPCLSTSTSNAYAVSSDNTIEYLPLSFCTKLFDISFVPIAFFRENVHVILLTWSEPNCKQCESEGNVCGSKNNTTNHELHCFPNHKGLVLGSFLLVLLSGAVFHIYEAYKLQKEKQAIIEKFLEDYKALKPTRYSYVEIKRITNNFKDKLGEGAYGTVFKGSISKDFMVAVKILNNSQGNGEEFVNEVATMGRIHHVNIARLVGFCADGFRRALVYEFLPNGSLQKFINSPDNRQNFLGWKRMQNIALGIAKGIEYLHQGCDQRILHFDIKPQNMLLDHDFTPKICDFGLAKLCSREQSIVSMTTARGTLGYIAPEVFSRNFGNVSYKADVYSYGMMLLETIGGRKITEDLEENTSHVYYPEWIHNLLEEREEKRIHIDDEGDAKIARKLAIVGLWCIQWHAMDRPSMQVVVQMLEGDIYRTPIPPNPFASTGSRSKSTNLGVAADN* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0688 556 Pfam Protein kinase domain 256 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0688 556 MobiDBLite consensus disorder prediction 535 556 - -
Apr1g0688 556 Gene3D Phosphorylase Kinase; domain 1 226 327 - -
Apr1g0688 556 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 547 IPR045874 GO:0004672
Apr1g0688 556 Gene3D Transferase(Phosphotransferase) domain 1 328 531 - -
Apr1g0688 556 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Apr1g0688 556 SUPERFAMILY Protein kinase-like (PK-like) 237 525 IPR011009 -
Apr1g0688 556 ProSiteProfiles Protein kinase domain profile. 253 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0688 556 ProSitePatterns Protein kinases ATP-binding region signature. 259 281 IPR017441 GO:0005524
Apr1g0688 556 MobiDBLite consensus disorder prediction 536 556 - -
Apr1g0688 556 Pfam Wall-associated receptor kinase galacturonan-binding 3 58 IPR025287 GO:0030247
Apr1g0688 556 SMART serkin_6 253 496 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0688 556 PANTHER RECEPTOR-LIKE KINASE 2 547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0688 Apr-Chr1 8212113 8214189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0688 5 537 Receptor kinase-like Gene Family AT1G66910 35.932 8.02e-108 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr1g0688 Pkinase 8.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0688 - - mtr:MTR_1g031540 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0688 1 8212113 8214189 Apr1g0688 1 8212113 8214189 ECH