Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0687 ATGCTATCCTTTGCTGTATCCCGGATAACCCTTTTGGTGGTGTTCCTACTCTTCCTCTATCAAAGTTACAAGTGCAATGCAAAGGAAGATGCTCAACTCTGTTCTCGCCGGTGTGGGATCCATAACATAACCCACCCTTTCCGGTTACAAGACAGTCCAGACACGTGTGGTGATACGAGGTACAACCTATCCTGCGAGGACAACCAATTGTTGCTCTATTTGGGCTTCGGAAAATACTATGTTAAGTCAATTAATTACAACAACTATACAATACGGTTAGTGGATGTCAACATTCGACCGCATGATTACTCCTCCCTTCCTCGTTATTCTTTAGGCCTCTACAATTTCAGCTTGAGTACACCATATACAACTTATCAGGATAGTAATAGCTCGGTAAAGTCTCTCTTATATTGGAGCTGTCCAAATGGGGTGGATTCCTCTCTTCACAATGTTAATGAAAATCCCATTTGCGTGAATACTTGGCATGCAGTGATTATTCATGACGAATCTCTTCGGGATTTGGGAATTGGAGATTCTTGTCGCATAGAGTTTATGTATATCACATCTTGGCCTAACGAATTAACTAATGGCAACGTTTCATGCGCTGAAATCCGTCATATGCTGCTTTATGGTTTTGAACTTTCTTGGCTCAGTAGTTTTTGTAAAGACCGGGAGTTCGGCTACCTCGACGACAATAGCCAGCATCGCTGTTTCGTTTTTCCAGGAGACGCTGATATATTGATTCTATTTTACTGGATATTAACATATGTCGCTTTGTTTTGTGGTGTCAAATTTGTGCTTGGAGCTCCATGTATCACTGTCTTATTTATCTATAAATGGAGGCGAAGGCATCTTTCAATGTATCACACCATTGAAGATTTTCTACGAAGTGACTATAGCATCATGCCTATAAGGTACTCTTACAAAGACATAAAGAGAATAACAGGGCACTTCAAGACAAAACTAGGGAATGGAGGTTATGGTTCTGTCTTCAAAGGACAACTTCGAAGTGGTCGTTTCGTAGCTGTCAAGATGTTGGATAAAGCCAATGCCAATGGTCAAGATTTCATCAATGAAGTTGCTACCATTGGTAGGATTCATCATGTTAATGTGGTGCAACTCATTGGTTTTTGTGTGGAGGGGTCAAAGCGGGCTCTAATATATGAGTTCATGCCAAATGGATCTCTAGAAAAATATATTTTTTCTAATGAAGAGAGGTCTTCCTTGAGTTGTGAAAATTTTCATGCCATTGCTCTTGGAGTGGCCCATGGTATTGAATATTTACATAATGGCTGCAATATGAAAATTTTACACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAGAATTTCAATCCAAAAGTTTCTGATTTTGGACTCGCAAGACTTTATCCTACAGATAATAGTATTGTGTCTTTGACTGCAGCAAGAGGAACCATAGGATACATGGCACCTGAACTCTTCTACAGAAATGTTGGCACAATTTCCTACAAAGCTGATGTTTATAGCTTTGGCATGTTGTTAATGGAGATGGCCAGTAGAAGGAAGAACTTGAACGCATTGGCTGAGCAGTCGAGCCAAATTTATTTTCCTTTTTGGGTTTATGATCGATTGCAAGATGAAAGGGAAATTACAATTGAAAATGACACAGAAGAAGAGATTAAATTGACAAAGAAAATGATGATTGTGGCCTTGTGGTGTATACAAACAAGGCCTGACAATCGTCCTTCGATGGTTAAAGTGTTAGAGATGCTCGAAGAAGATAAGGAATTGCAGATGCCTAGTAAGCTCTACTTATATCTACAAGATCTAGCAGCTGAGGACATTAGAGATCATAGTAGTTCAAGGTCATCCTCTGATATATCAACAAATGATTGA 1881 0.3945 MLSFAVSRITLLVVFLLFLYQSYKCNAKEDAQLCSRRCGIHNITHPFRLQDSPDTCGDTRYNLSCEDNQLLLYLGFGKYYVKSINYNNYTIRLVDVNIRPHDYSSLPRYSLGLYNFSLSTPYTTYQDSNSSVKSLLYWSCPNGVDSSLHNVNENPICVNTWHAVIIHDESLRDLGIGDSCRIEFMYITSWPNELTNGNVSCAEIRHMLLYGFELSWLSSFCKDREFGYLDDNSQHRCFVFPGDADILILFYWILTYVALFCGVKFVLGAPCITVLFIYKWRRRHLSMYHTIEDFLRSDYSIMPIRYSYKDIKRITGHFKTKLGNGGYGSVFKGQLRSGRFVAVKMLDKANANGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRALIYEFMPNGSLEKYIFSNEERSSLSCENFHAIALGVAHGIEYLHNGCNMKILHFDIKPHNILLDENFNPKVSDFGLARLYPTDNSIVSLTAARGTIGYMAPELFYRNVGTISYKADVYSFGMLLMEMASRRKNLNALAEQSSQIYFPFWVYDRLQDEREITIENDTEEEIKLTKKMMIVALWCIQTRPDNRPSMVKVLEMLEEDKELQMPSKLYLYLQDLAAEDIRDHSSSRSSSDISTND* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0687 626 PANTHER RUST RESISTANCE KINASE LR10-RELATED 11 224 IPR045874 GO:0004672
Apr1g0687 626 PANTHER RUST RESISTANCE KINASE LR10-RELATED 257 606 IPR045874 GO:0004672
Apr1g0687 626 Pfam Wall-associated receptor kinase galacturonan-binding 34 95 IPR025287 GO:0030247
Apr1g0687 626 SMART serkin_6 316 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0687 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Apr1g0687 626 Gene3D Phosphorylase Kinase; domain 1 296 390 - -
Apr1g0687 626 ProSitePatterns Protein kinases ATP-binding region signature. 322 344 IPR017441 GO:0005524
Apr1g0687 626 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 11 224 - -
Apr1g0687 626 PANTHER STRESS-INDUCED RECEPTOR-LIKE KINASE 257 606 - -
Apr1g0687 626 ProSiteProfiles Protein kinase domain profile. 316 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0687 626 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Apr1g0687 626 Pfam Protein kinase domain 318 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr1g0687 626 Gene3D Transferase(Phosphotransferase) domain 1 391 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0687 Apr-Chr1 8208001 8211226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0687 4 624 Receptor kinase-like Gene Family AT5G38260 34.467 6.57e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Apr1g0687 Pkinase 4.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0687 - - aip:107607706 717.998