Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0681 ATGATTCTCATACTCACGCTCTTCTTCCTCCTGAACCCTCCGCTAACACACCTAATAGTAGTAGCAAACATAGAAACATGCTTAGACAGTGTTTGCAAAACGAAGGAACCACTAATCCGATTCCCCTTCTACAAAAAGGAAAAGCAAGGAAAGACATGCGGATACCCAGGGTTCAGAGTATCATGCAGCGAGGAAGGCCAAACACTGCTCAACCTACCTTATTGGGGAGAACTCAGAATCCAAGAAATAAACTACGCCACACAGCAACTATGGGTTAACGACCCCAACAACTGTCTGCCGAAACGCCTTCTCTCTCTCAACCTTTCTGCCTCTCCATACGACGCCGTTTACTACCAAAAATTCACCTTCTTCAACTGCTCCTTCAACCTGGAGTACCTCGTCCATCGCTACAACCCCATACCTTGTCTTAGTGATTCCTCTAAATATGCCGTTTTCGCAACACCTTCTCCCACCGTCCACTCGTACTTGTCATCTGTTTGTGATTTCGTTGAGACGTTGAAGGTGCCGGTTCAGTCGCCGTTTTACGATCATGTTTTGTCGTCTGACCTCAGCGATGACCTACGTCTGTCGTGGGATTCGCCGGCGTGTGGGAGGTGCGAGTCCCACGGTGGCCGCTGCGCCTTCAAGACCAACTCCACTTTTGAACTTGACTGTTCCTATGTCTCTTCAGAAGGGATTTCACGCGGTGCACGTTACGCCTTGGCCATATGCTTAGGGGTACCGGCGTTGCTGTGCTGCATGGGAATATTGAGTTGCATCTGCAGCAGGTTAAGAGTTGAGACCCAAGGTTGGGCTTGGGGTCATGAGACGGTGCCGGATTTTGAGGCTCTATCTGGGTCACGGCCCACCACCGTCTCAGGCCTTGATGGGCCTACAATTGAGTCCTACCCAAAAATAGTTATAGGCCAGAGCAAACGCTTACCCATGCCAGATGATAGGACCTGCTCAATATGCCTCTCTGAGTATGTGCCCAAAGAGACAGTGAAAAGCATACCTGAATGTGGACATTGCTTTCATGCACAATGCATCGATGAATGGCTTCCACTGAACGCGTCGTGCCCAATTTGCCGAACTTCTCCCCGAAAGCTACCACAACCCCTTGCACGATCATTATCATAA 1140 0.4956 MILILTLFFLLNPPLTHLIVVANIETCLDSVCKTKEPLIRFPFYKKEKQGKTCGYPGFRVSCSEEGQTLLNLPYWGELRIQEINYATQQLWVNDPNNCLPKRLLSLNLSASPYDAVYYQKFTFFNCSFNLEYLVHRYNPIPCLSDSSKYAVFATPSPTVHSYLSSVCDFVETLKVPVQSPFYDHVLSSDLSDDLRLSWDSPACGRCESHGGRCAFKTNSTFELDCSYVSSEGISRGARYALAICLGVPALLCCMGILSCICSRLRVETQGWAWGHETVPDFEALSGSRPTTVSGLDGPTIESYPKIVIGQSKRLPMPDDRTCSICLSEYVPKETVKSIPECGHCFHAQCIDEWLPLNASCPICRTSPRKLPQPLARSLS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0681 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 373 - -
Apr1g0681 379 SMART ring_2 322 363 IPR001841 -
Apr1g0681 379 Pfam Wall-associated receptor kinase galacturonan-binding 27 94 IPR025287 GO:0030247
Apr1g0681 379 SUPERFAMILY RING/U-box 313 367 - -
Apr1g0681 379 Pfam Ring finger domain 321 364 IPR001841 -
Apr1g0681 379 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 16 373 - -
Apr1g0681 379 Pfam Wall-associated receptor kinase C-terminal 164 227 IPR032872 -
Apr1g0681 379 ProSiteProfiles Zinc finger RING-type profile. 322 364 IPR001841 -
Apr1g0681 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 368 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0681 Apr-Chr1 8174158 8176873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0681 25 367 C3H Transcription Factor Family AT2G46495 37.069 3.53e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0681 - - gmx:100818969 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0681 1 8174158 8176873 Apr1g0681 1 8174158 8176873 ECH