Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0679 ATGTCGTCGACGGTGCTGGAAGTGACGCGGGGAGCGCACGAGGAGGTGGAGCGGTTGGAGCGGCTGATAGTGAAGGACCTTCAGAATGAACCGGTCTCCAACAAGGAGCGTTTGTATCAGAGTCACCGTGTACGCAACATGATCGACACCATTTCCTCCACCACTCAAAAGCTTATTGAGATATATGAAGATAACGACAATGCTAGGAAGGATGAGATTGCTGCACTCGGAGGACAAACTGCCACCGGAATTAACGTTTTCAGTGCTTTTTATGATAGGCTCAAAGAGATACGAGAGTATCATAGGAAGCACCCAGCTGCACGTGTTGTTGATGCTAATGACGATTATGAAGTACTTCTTAAAGAGGAGCCTCAAATTGAGTTTAGTGGAGAGGAAGCTTTTGGTCGTTACTTAGACATGCATGAATTATACTATCACTATATCAATTCTAAATTTGGCAAGCCAATTGAGTATTCTGCATACCTTGATGTTTTCCCGGACACAGATAAGATTCCTCGCAAAATGAAAATGACCAGACAGTACTGGGAATATATGGAAAATCTTCTGGAGTATCTGCTATACTTTTTCCAGCGGACAGAACCCCTGCAAGATCTTGATCGAATTTTCTTAAAGGTAACGACTGAATTTGAAGAAAATTGGGCTGCTGGAATGGTGCTGGGATGGGAGAATGACAATCAGGAGAATGGACATGTACCCACTCAACACACTACGATTGATCTGGATTATTATAGTACAGTTGAAGAGCTGATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCACTTGCTGCATTGGGGCTTAAGAGTGGTGGTACTGTTCAGCAACGGGCAGAGAGGCTTTTCCTCACAAAGCACACACCTCTTGAAAAGTTGGACAGGAAGCATTTTGCTAAGGGGGCACGTGGTTTAGAAAAAAATGGGGTTGGAGCAGTTCCACAAGAAGATGGAAATTCTAAGGAAATTGCATTGATGGAAGCCAAAATGAAAAAGCTGTGTGATTTGTTAGAAGAGACAATTGCTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTGACATACGAGGAAATTGAAGCAGAGCGTGAGGAGGAAGAGACACAAGAGGACACAGAAAGCGAAGATGAGGAGCAGCAGATATATAATCCCCTAAAATTGCCGATGGGGTGGGATGGGAAGCCTATACCTTATTGGCTGTATAAGCTACATGGTCTGGGTCAGGAATTTAAATGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGGGCTTTTGAACGACACTTTAAAGAATGGCGCCATCAACATGGGATGCGATGTCTTGGTATACCAAATACTAAGAACTTCAATGAAATAACATCAATTGAGGAAGCAAAAGATCTTTGGAAGAAGATACAGCAAAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTATGAAGACAAAGAAGGCAACATATATAATAAGAAGACATACACTGACTTACAGCGCCAGGGACTGATATGA 1530 0.4353 MSSTVLEVTRGAHEEVERLERLIVKDLQNEPVSNKERLYQSHRVRNMIDTISSTTQKLIEIYEDNDNARKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPAARVVDANDDYEVLLKEEPQIEFSGEEAFGRYLDMHELYYHYINSKFGKPIEYSAYLDVFPDTDKIPRKMKMTRQYWEYMENLLEYLLYFFQRTEPLQDLDRIFLKVTTEFEENWAAGMVLGWENDNQENGHVPTQHTTIDLDYYSTVEELMEVGPERLKEALAALGLKSGGTVQQRAERLFLTKHTPLEKLDRKHFAKGARGLEKNGVGAVPQEDGNSKEIALMEAKMKKLCDLLEETIARTKDNVVKKQALTYEEIEAEREEEETQEDTESEDEEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKDLWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0679 509 Pfam SF3a60/Prp9 C-terminal 390 509 IPR024598 GO:0000398|GO:0003723|GO:0005681
Apr1g0679 509 ProSiteProfiles Zinc finger matrin-type profile. 414 445 IPR000690 GO:0003676|GO:0005634|GO:0008270
Apr1g0679 509 PANTHER SPLICING FACTOR SF3A-RELATED 1 509 - -
Apr1g0679 509 PANTHER BNAA03G01920D PROTEIN 1 509 - -
Apr1g0679 509 Coils Coil 353 380 - -
Apr1g0679 509 MobiDBLite consensus disorder prediction 363 383 - -
Apr1g0679 509 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Apr1g0679 509 MobiDBLite consensus disorder prediction 363 382 - -
Apr1g0679 509 Pfam Replication stress response SDE2 C-terminal 225 304 - -
Apr1g0679 509 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0679 Apr-Chr1 8138064 8145860 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0679 1 509 C2H2 Transcription Factor Family AT5G06160 74.460 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0679 K12827 - gmx:100815393 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0679 1 8138064 8145860 Apr1g0679 1 8138064 8145860 ECH