Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0676 ATGATTATCAAGAAAAACTTGAAATCCCAAATGCCGAGTTTGAAACGGGTAAAACTCAGTGACCCGGTGGGTGAAGACGATGAGTCTTCTTATGCTCGTAAGAAGAGGAAGACCAACGGGTTCTACCCTTTGAACCTTCTTGGAGATGTCGCTGCCGGGATAATCCCGGTGAGTTTACATGGGTTGCTTAGCACCGGCATGTCGGAGAAGGGTTTCTCTGCGTCGTGGTGCACCCAAGTTTCGTGCTCCCCCGGGGAAGTGGAATCGAACTCGAAAAACGACGCCGTAAGAGCGAAGAAGGAACCGGTTCAACGACCACCACTGGTTCGAACTTCGAGGGGGCGAGTTCAGGTTTTACCTTCGCGCTTCAATGACTCGGTTATTGATAATTGGAGGAAAGAGAGCAAGAGTAGCAGCATGCGTGATTCTGATTTTGATGATGAATTTGAATGCAAGAAGGACAAGCTCAGCTTCAAGGCACCCAAAATTTGCAATCAAAAGGCAAAGAAAGGGCGAAACGACGAGAAAACAGGTTCGAAGACTCGTAGGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTATAAGAGTTTTGATAGGAGCAAGTATTCGAGTTTGCGTGGTGCATTGGCCTTGAGGCGAGAGGTGTTGGTTGAGGAAGATGAGAGAAGGTTTTTGGAGGTGGAAGGAGTTGATTTGATGGGGAATGAGATGGTTTTGAAGGAGAATGTGGAGAAGAAAGATGGTCTGTTTGGACCAGAAGATTTTTATGCTGGTGATATAGTATGGGCCAAAGCAGGGAGAAAGGAACCTTTTTGGCCCGCCATTGTTATTGATCCTATGTCTCAGGCACCTGAGTTGGTCCTCAGGTCTTGTATAGCTGATGCAGCTTGTGTTATGTTTCTTGGGTATGCAGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGGATGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAGGGGCTGTCTGAATTGAGTGACTATAATCCTTCTGAATTACAAATTGCTGTAGAGGAGGCATTTTTGGCAGAGCAGGGTTTCACAGAGAAGTTGATAGCAGATATAAATACAGCGGCTGGTAACAATGGTTATGATGACTCTATTCTGAAAGCCTTTCAGGAGGTCAGTGGTTCAAACCAATATGCAGGATATCACTTTGTGAACCAAGATTTATTTGATAAGAAAGAGACACGACCTTGTGAAGCCTGTGGATTGAGCCTTCCTTACAAGATGTCTAAGAAAACAAAGGATTCGAGTCCTGGTGGCCAATTCCTTTGTAGAACATGTGCTAGGTTAACAAAATCAAAACATTATTGCGGCATATGCAAGAAGGTTTGGAATCATTCGGATAGTGGAAGCTGGGTCCGCTGTGATGGATGTAAAGTGTGGGTGCACGCAGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCGGAAAAATCACAGCCAAAAGTCAAGTGTAACAAAAACAATGGGCAGCTTGTACTTCCAAATAAGGTCACTGTTCTCTGCAATAGTGTAGAAGGCATATATTTTCCAAGCCTTCATTTAGTTGTGTGCAAGTGTGGGTTTTGTGGAACAGAAAAGCAAGCACTTAGTGAATGGGAACGACACACAGGTTCCAAATTAAGGAATTGGAGAACAAGTATTAGGGTGAAAGACTCCATGCTTCCGCTGGAACAATGGATGTTGCAGTTGGCAGAATTCCATGCTAGTGCTTTAGTTTCTGTCAAACCTAAAAAACCTTCTCTAAAAGAAAGAAAGCAGAAATTGCTTACGTTTTTGCGAGAGAAGTATGAACCTGTTCATGCTAAGTGGACTACAGAACGCTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAACAAAATTATCATTTGCAACAGATGTCAAATAGCTGTTCATCAAGAATGCTACGGAGCAAGAAATGTCCAAGACTTTACATCTTGGGTTTGTAAGGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACTTGTGCTTGGTTTCGCCCTGAAGTATCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGTAAGCAAATTCATGGTTCATGCACGCAATGTTGCAAGTGTTCGACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTATCGAATGGAGTTGCATTGTTTAGAGAAAAATGGAAGGCAGACAACAAAAATGGTCTCTTATTGTGCTTACCACAGGGCTCCAAATCCAGACACTGTTTTGATTATGCAGACCCCTCTTGGGGTCATTTCAACTAAAAGCCTTCTCCAAACTAAGAAAAAAACTGGTTCAAGGTTAATCTCATCTAACAGAATAAAGCAAGAAGACCCTCCTATTGATAACACTGAGCATGACCCGTTCTCTGCTGCTAGGTGCCGTATCTTTCAAAGAACAAACCCTACCAAAAAGAGAGCAGCAGATGAAGCCATTTCTCTTCGAGTGCGGGGTCACTACCATCATCCTTTAGATGCAATACAGAGTTTAAATACACCGAGAGTGGTACAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGAGAACCGAAAATGAACGCGTTTGCTTTGGTAGATCGGGCATACATGGATGGGGCCTGTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGTGAACAAGTGAGACGCAGCGTTGCAGATCTGAGGGAGGCACGCTATAGAGCAGAAGGGAAAGACTGCTATCTGTTTAAGATAAGTGAAGAAGTAGTGGTAGATGCCACTGATAAAGGAAATATAGCACGACTGATTAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGTGATGAGGAGAGCCGGATTGTACTCATTGCTAAGACCAACGTGTCTTCCGGCGATGAACTAACGTATTCTCTCTCCATATCTACAATTTGTATTAGCGCATGCTTGCATGCACGTGTGTTGACGTGTCTCTTGCATGTGTTGTGTGCATTTGCATTTTCTTTTGAGTTGATATTGGTTGTTTTGGGCAGGTATGACTACTTGTTTGATCCTGATGAGCCAGATGAATTCAAAGTTCCCTGCCTTTGTAAAGCTCCAAACTGCCGGAAATTCATGAATTAG 3360 0.4315 MIIKKNLKSQMPSLKRVKLSDPVGEDDESSYARKKRKTNGFYPLNLLGDVAAGIIPVSLHGLLSTGMSEKGFSASWCTQVSCSPGEVESNSKNDAVRAKKEPVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKSSSMRDSDFDDEFECKKDKLSFKAPKICNQKAKKGRNDEKTGSKTRRYSALCGDDVGVRYKSFDRSKYSSLRGALALRREVLVEEDERRFLEVEGVDLMGNEMVLKENVEKKDGLFGPEDFYAGDIVWAKAGRKEPFWPAIVIDPMSQAPELVLRSCIADAACVMFLGYAGNENQRDYAWVKHGMIFPFMDYVDRFQGLSELSDYNPSELQIAVEEAFLAEQGFTEKLIADINTAAGNNGYDDSILKAFQEVSGSNQYAGYHFVNQDLFDKKETRPCEACGLSLPYKMSKKTKDSSPGGQFLCRTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKCNKNNGQLVLPNKVTVLCNSVEGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWRTSIRVKDSMLPLEQWMLQLAEFHASALVSVKPKKPSLKERKQKLLTFLREKYEPVHAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGARNVQDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCLEKNGRQTTKMVSYCAYHRAPNPDTVLIMQTPLGVISTKSLLQTKKKTGSRLISSNRIKQEDPPIDNTEHDPFSAARCRIFQRTNPTKKRAADEAISLRVRGHYHHPLDAIQSLNTPRVVQEPQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSVADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDEESRIVLIAKTNVSSGDELTYSLSISTICISACLHARVLTCLLHVLCAFAFSFELILVVLGRYDYLFDPDEPDEFKVPCLCKAPNCRKFMN* 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0676 1119 Gene3D SET domain 832 1119 IPR046341 -
Apr1g0676 1119 ProSitePatterns Zinc finger PHD-type signature. 646 691 IPR019786 -
Apr1g0676 1119 ProSiteProfiles PWWP domain profile. 259 328 IPR000313 -
Apr1g0676 1119 ProSiteProfiles Zinc finger PHD-type profile. 449 505 IPR019787 -
Apr1g0676 1119 Pfam PHD-finger 451 504 IPR019787 -
Apr1g0676 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 633 694 IPR013083 -
Apr1g0676 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 445 507 IPR013083 -
Apr1g0676 1119 CDD SET_SETD1-like 922 1115 - -
Apr1g0676 1119 SUPERFAMILY SET domain 925 1119 IPR046341 -
Apr1g0676 1119 SUPERFAMILY FYVE/PHD zinc finger 449 506 IPR011011 -
Apr1g0676 1119 Pfam SET domain 946 1050 IPR001214 GO:0005515
Apr1g0676 1119 SMART PostSET_3 1103 1119 IPR003616 -
Apr1g0676 1119 ProSiteProfiles Zinc finger PHD-type profile. 643 694 IPR019787 -
Apr1g0676 1119 CDD ePHD_ATX3_4_5_like 700 811 IPR041955 -
Apr1g0676 1119 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1053 - -
Apr1g0676 1119 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1091 1119 - -
Apr1g0676 1119 MobiDBLite consensus disorder prediction 84 104 - -
Apr1g0676 1119 Gene3D - 254 362 - -
Apr1g0676 1119 CDD PHD_TCF19_like 452 502 - -
Apr1g0676 1119 SUPERFAMILY Tudor/PWWP/MBT 252 358 - -
Apr1g0676 1119 SMART PHD_3 756 812 IPR001965 -
Apr1g0676 1119 SMART PHD_3 451 503 IPR001965 -
Apr1g0676 1119 SMART PHD_3 645 692 IPR001965 -
Apr1g0676 1119 CDD PHD_ATX3_4_5_like 645 691 IPR042011 -
Apr1g0676 1119 ProSiteProfiles SET domain profile. 935 1052 IPR001214 GO:0005515
Apr1g0676 1119 SUPERFAMILY FYVE/PHD zinc finger 643 708 IPR011011 -
Apr1g0676 1119 Pfam PHD-zinc-finger like domain 699 811 - -
Apr1g0676 1119 Pfam PWWP domain 260 354 IPR000313 -
Apr1g0676 1119 Pfam PHD-finger 658 692 - -
Apr1g0676 1119 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 1119 IPR025780 -
Apr1g0676 1119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 814 IPR013083 -
Apr1g0676 1119 ProSiteProfiles Post-SET domain profile. 1103 1119 IPR003616 -
Apr1g0676 1119 PANTHER PHD FINGER PROTEINS 1 1053 - -
Apr1g0676 1119 PANTHER PHD FINGER PROTEINS 1091 1119 - -
Apr1g0676 1119 ProSiteProfiles Extended PHD (ePHD) domain profile. 697 812 IPR034732 -
Apr1g0676 1119 SMART set_7 935 1056 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0676 Apr-Chr1 8082829 8097568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0676 646 811 C2H2 Transcription Factor Family AT3G14740 32.948 2.54e-19 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Apr1g0676 zf-HC5HC2H_2 2.4e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0676 - - aprc:113853254 2280.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0676 1 8082829 8097568 Apr1g0676 1 8082829 8097568 ECH