Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0670 ATGGAGTACGGAAGGCTGGGGCCCACTGATCCTGGTGGTTCTTTGCGTTTAGACGCTCCTCCCGTTAGCCAAAAATCCTCCACCAAGAAGAACATCATTTTGCTGTCGCTTCTAGCCGTCGTTCTAATCGTCGCTTCCGCCGTCTCCGCCGTTTTGCTCACCGCCGTTCGCTCTCGTGCTTCCGGCCACGATCCCAACGGTCCTAACCTCCGCGGGAAGCCGACGCAGGCGATTTCCCGCACGTGCAGCAGAACGATGTTTCCCACGCTGTGTGTGAACTCGCTCCTGGATTTTCCGGGATCCGCGACGGCGTCCGAGCAGGACCTGGTTCACATTTCCTTCAACGTCACGCTGCAGCATCTCTCCAAGGCGCTCTATTCTTCCGCCGCGATGTCCAATTCCTACGCCACCATGGACCGCCGCGTCCGCGCCGCCTACGACGACTGCCTCGAGCTCCTGGACGACTCCGTCGAAGCTCTCGCTCGCTCCCTTAACTCCGTCTCCGTGAGTCCCGTCGGCTCCTCCAACGACGACGTGCTGACGTGGCTTAGCGCCGCGCTCACCAACCAGGACACTTGCGCCGAGGGCTTCGCCGACACCAGCGGCAACGTGAAGGACCAGATGGCCAACAACCTGAAGGACTTGGCGGAGCTTGTGAGCAATTGTCTCGCGATTTTCTCCTCCGCAGGCCCCGGAAACGACTTCGCCGGTGTTCCCATTCAGAACAGGAGACGGTTGATGGCAATGCGACACGATAATTTCCCGAGATGGTTGAATAAACGAGATAGGAGATTGCTGAGCTTGCCAGTGTCGGCGGCACAAGCCGATGTTGTCGTGTCGAAGGACGGTAACGGAACGGTGAAGACCATTGCCGAGGCCATTAAAAAGGTGCCAGATTACGGTACACGGCGCTTCATTGTCTACGTCAGGGCGGGAAGGTACGAAGAGGACAATTTGAAATTGGGAAGGAAGAAAACCAATGCGATGTTCGTAGGGGAGGGGAAGGGCAAGACCGTCATCACAGGTGGCAAGAATTATATGGAGGGCATGACAACGTTCCACACCGCCTCCTTCGCCGCTAATGGTCCTGGCTTTATTGCAAAAGACATGACATTCGAGAACTACGCCGGGCCAGGGAAGCACCAAGCGGTGGCCCTCCGTGTCGGAGCCGACCACGCGGTGGTTTACAACTCCAACATCATCGGATACCAAGACTCATTGTATGTCCACTCGAACCGTCAATTTTTCCGTGAATGTGACATTTACGGAACCGTGGACTTCATATTCGGCAACGCCGCAGTGGTTTTCCAAAAGTGCAACCTCTACGCTCGCAAGCCCATGCCCCAACAAAAGAACACCATCACGGCCCAAAACAGAAAGGATCCAAATCAAAATACGGGTATTTCAATCCACAACTGTCGGATCCTGGCCACTTCGGATCTGGAAGCAGCCAAGGGTAGCTACCCTACCTATTTGGGTCGTCCATGGAAACTATACTCTAGAACGGTGTACATGCTGTCCTACATGGGGGACCACATTCATCCACGTGGTTGGCTAGAATGGAACACTTCATCGTTCGCTTTGGACACATTGTACTATGGTGAATACATGAATTCAGGGCCGGGTGCAGCTATTGGGCAACGGGTAAACTGGGCCGGGTATCGGGTCATAACTTCCACTGTGGAAGCAAGTAGATTCACAGTGGGCCAGTTCATATCAGGCTCCTCCTGGTTGCCATCCACCGGAGTCGCCTTCATTGCTGGGTTATCAACCTGA 1776 0.5512 MEYGRLGPTDPGGSLRLDAPPVSQKSSTKKNIILLSLLAVVLIVASAVSAVLLTAVRSRASGHDPNGPNLRGKPTQAISRTCSRTMFPTLCVNSLLDFPGSATASEQDLVHISFNVTLQHLSKALYSSAAMSNSYATMDRRVRAAYDDCLELLDDSVEALARSLNSVSVSPVGSSNDDVLTWLSAALTNQDTCAEGFADTSGNVKDQMANNLKDLAELVSNCLAIFSSAGPGNDFAGVPIQNRRRLMAMRHDNFPRWLNKRDRRLLSLPVSAAQADVVVSKDGNGTVKTIAEAIKKVPDYGTRRFIVYVRAGRYEEDNLKLGRKKTNAMFVGEGKGKTVITGGKNYMEGMTTFHTASFAANGPGFIAKDMTFENYAGPGKHQAVALRVGADHAVVYNSNIIGYQDSLYVHSNRQFFRECDIYGTVDFIFGNAAVVFQKCNLYARKPMPQQKNTITAQNRKDPNQNTGISIHNCRILATSDLEAAKGSYPTYLGRPWKLYSRTVYMLSYMGDHIHPRGWLEWNTSSFALDTLYYGEYMNSGPGAAIGQRVNWAGYRVITSTVEASRFTVGQFISGSSWLPSTGVAFIAGLST* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0670 591 Pfam Plant invertase/pectin methylesterase inhibitor 77 225 IPR006501 GO:0004857
Apr1g0670 591 SMART PMEI_2 73 225 IPR006501 GO:0004857
Apr1g0670 591 TIGRFAM PME_inhib: pectinesterase inhibitor domain 63 227 IPR006501 GO:0004857
Apr1g0670 591 Pfam Pectinesterase 276 574 IPR000070 GO:0030599|GO:0042545
Apr1g0670 591 MobiDBLite consensus disorder prediction 1 23 - -
Apr1g0670 591 CDD PMEI-like_3 82 227 - -
Apr1g0670 591 PANTHER PECTINESTERASE 22 589 - -
Apr1g0670 591 Gene3D - 270 589 IPR012334 -
Apr1g0670 591 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 229 IPR035513 -
Apr1g0670 591 SUPERFAMILY Pectin lyase-like 271 588 IPR011050 -
Apr1g0670 591 ProSitePatterns Pectinesterase signature 2. 421 430 IPR033131 -
Apr1g0670 591 PANTHER PECTINESTERASE 22 589 - -
Apr1g0670 591 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 227 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0670 Apr-Chr1 7982515 7986619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0670 1 590 Carbohydrate Esterase AT5G53370 65.152 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0670 - - gmx:100808236 939.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0670 1 7982515 7986619 Apr1g0670 1 7982515 7986619 ECH