Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0656 ATGGACCTTTTCACCGAATATGATTTCCCCAACCTTGAGATGATTCCTCATGGCTTCAACTATCTTTGCTCTGCTACACAAACCCAAACAGACAAAATCATGGAGATTTCACCATTTGAGGGTTTCTTGGAGTTTGATCGTACACCAGAGTTGCCTTACCAAAGGAAGGAACTTTGCTTCAACGAGTTCCCAGATCTCGAAAATTTCAACTTCGATTTTAACCTACCACCTCTAGGTGAAGATTTTGATGAGGTGGACCAGAAGCCACTCAACATAGTTGTGCCCTACAATGGTGAGGGTGAAAGAGGGTTTGTGAAGAAAGAGGAGGTTGTGGATAATGAAGAGAGGGCATTGGCAGTGCCTAGTAGCAGTAGGAAGAAGAGGTCATGTGTGTTGGAATTTGACGAGATAAAGAAGCATTTTGGCGTTCCCATAACTGAAGCTGCTAAGGAAATGAATGTGGGGTTAACCCTGTTGAAGAGAAGGTGCAGAGAACTCAACATAATGAGGTGGCCTCATAGGAAACTCAAGAGCTTGAAGTTACTCATAGATAACGTCAAGGAATTGGGTTTGGCAAACGAGGTTGCCATGTTGGAGAAGCATAAAATGATGTTGGAAAAATTACCAGGATTGGAACTGAGTGAAGAAACCAAGAAGCTGAGGCAGGCTTGTTTTAAAGCTAATTACAAGAGGAGAAGATATTTGGCTCTCCAAGCTTGA 720 0.4278 MDLFTEYDFPNLEMIPHGFNYLCSATQTQTDKIMEISPFEGFLEFDRTPELPYQRKELCFNEFPDLENFNFDFNLPPLGEDFDEVDQKPLNIVVPYNGEGERGFVKKEEVVDNEERALAVPSSSRKKRSCVLEFDEIKKHFGVPITEAAKEMNVGLTLLKRRCRELNIMRWPHRKLKSLKLLIDNVKELGLANEVAMLEKHKMMLEKLPGLELSEETKKLRQACFKANYKRRRYLALQA* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0656 239 Pfam RWP-RK domain 132 179 IPR003035 -
Apr1g0656 239 ProSiteProfiles RWP-RK domain profile. 114 200 IPR003035 -
Apr1g0656 239 PANTHER PROTEIN RKD4 123 233 - -
Apr1g0656 239 PANTHER PROTEIN RKD4 123 233 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0656 Apr-Chr1 7845270 7846435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0656 132 236 AtRKD Transcription Factor Family AT5G53040 63.810 1.45e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Apr1g0656 RWP-RK 3.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0656 - - aprc:113850801 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0656 1 7845270 7846435 Apr1g0656 1 7845270 7846435 ECH