Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0638 ATGGCGAGTGAATTATTAGTTCCTGCCTCAATTACCCCAGCATCTGAGTTACTTTCCCAGCCCATCTTAACTTTAGTTGATACTGTCAAAGCGGCCAATGAGGTTGTGATTCATAAGGAAAATTTTAAGAGATTTTCTATTCACTTGGACAATATCTCTTTTCTATTGAGGTCTTTATCAAAGGAAGATATACACAATCCCAAGAGCTTGGAAAATGCTACGGATGTTCTCAACCGTGAGGTTGGAGTTGCTAAGCACCTTGTTTTTGAGTGCAACAGTAGAAATAAACTTTATCTTTTAATCAATTCAAGAAAGATAGTTACACGCTTGAACTGTTGTACCAAAGATATAAGCCGAGCAGTGAGTCTCATCCCTTTGGCCTCATTGGACATTAACTCTGGTTTAAATCAACAGATAAGTGAGTTATGCCAGAAAATGTTAGGTGCTGATTATCAAATAGCAGAATTAGATGAGGAAATCTTGGAAAAAATTGAGATAGCAATACAAGAGGGAAATGTTGATAGGTCATATGCAAATCAGTTGCTAGCTTGTGTTGCAGATGCTATAGGGGTCCCTATGGAGCATGGTGCTTTGAAGAGAGAGTTTGAAGAGCTGAAAAATGAAATGGAAAATGCTAAGTCAAGGATAGATGTGGCTGAAGCTCTACATATGGAGCAGGTTATTGCAGTGTTTGGAAAGGCTGATTTAATAACTTCAGCACAAGAGAAGGAAAGCCAATATTTTGAAAAGAGAAATTCCTTGGGAAGGAGACCCTTGATGGCTCTTCAGTCTTTTTACTGTCCAATCTCTCTTGATATTATGGTGGACCCTGTGGAGACATCCTCTGGGAAGACATTTGAGAGAAGTGCAATAGAGAAGTGGATTGCTGAAGGGAAAAATCACTGTCCCTTGACCATGTTGCCTCTGGATACTTCAATCCTGAGGCCAAACAAAACTTTAAAACAGTCTATTCAAGAATGGAAGGACAGGAACACAATAATTACCATTTCTACCATCAAATCTGAACTTGAAACAAATGAAGACGAGGGAGTGCTTCAATCATTAGACAAATTGCAGGACCTATTCTTAGAAAGAGAGGTGCACCGAGAATGGTTTAAAATGGAGAATTACATTGCTGTTCTTATTGGACTTCTTGCTTCTAAAAATAGAGAAATAAGGAAGCGTGTTTTACTCATCCTCTCTTTATTTGCAATTGATAATGCAGAGAACAAGGAGGATATTGCTAAAGTGGATAATGCACTTGGATCAATAGTTCGCTCACTTGCGCGTCAAATTGAGGAAAGCAAGTTAGCATTGGAGTTGCTGTTGGAGTTATCTAAATGTAAGATGGTGTGCAATCTCATAGGAAACATTCAAGGAAGCATACTTCTCCTGGTAACAATGTTAAAGAGTGATGATGTTGAAGCAACCAAAAATGCACATGAGCTGCTGGAGAACCTCTCTTTCCTTGATCAGAATGTTATAGAGATGGCAAAAGCAAATTATCTTAAGCCTTTACTGCTAAAACTTTCTACAGGACCCGAAAATATGAAGATAGTCATGACTAAAACTTTGTCAGAAATTACGTTGACTGATCAGAATAAATTGTTCTTGGTCAAAGATGGGGCACTGCAGCCTCTTCTTCAGCTGCTCTTAAACAATGATGTGGAAATGAAGAAAGTGGCTGTTAAAGCTCTACTACAGCTCTCAAGCTTGCCAGAGAATGGCCTGCAGATGATAAAGGAAGGTGTTGCTCAACCATTATTTGAACTGCTATACTATCACAGTTTACAGACACCGACTTTACTTGAACATGTTGTTGCTACAATAATGCATCTTGCCATATCAACCACTCATCAACAAGCTGAAGCAGACCAAGTTTCATTGTTAGATTCTGAGGAAGACATATTCAAATTCTTCTCTCTAATTTCTTTGACTGAACCTGATATACAAAACAAGATTCTCAAAGCTTTTCAGTCATTGTGCCAATCTTTCTCTGGCTTCCGAATCAGAAAGAGGTTGAGACAGATCTCAGCTGCTAAAGTATTGGTCCACTACTTGGAGCTTAATACCCAAACACTGCGGGTCAATGCCTTGAAGCTTTTCTATTGCTTAACAGAAGATAGTGATTATGACAACATCTCATCGCACATAACTGAAAGATTCATTAAAGTATTGCTTACGATCATTGAGGTTTCGGATGATGCAGAAGAGATGGTTACGGCTATGGGTATCATCTCTAAACTACCGCAGGAGTCTTACATGACTCAATGGCTTCTAGATTCAGGAGCACTTAAAATTATTTTAACATGTCTTACTGATCAACATAAGCATGCCTTACACAAAAAGCAAGTCATAGAGAATTCTGTTCAAGCTCTTTGTCGTTTCACTGTCTCAACCAATCTGGAGTGGCAAAAGAGAGTAGCTGAAGAAGGGATAATTCCAGTGCTGGTGCAATTGCTGTCTTCTGGAACACCCTTTTCAAAACAAAATGCAGCCATTTCAATCAAACAGTTTTCAGAAAATTCATATGGCTTGAGCAAGCCAATAAAGAAGAAACCAAGTATTTTCAAATGCTGCCTTATAACCCAAGAAACTGGCTGCCCAGCACACCTAGGAACGTGCACAGTTGAGTCTTCATTCTGCATTGTACAAGCTAATGCCTTGGAGCCCCTTGTAAGAATGCTAGCAGAGCAAGATGTTGGAACATGTGAAGCTTCCTTAGATGCACTATTAACTTTGCTTGACAATGAAGCACCACAGAGTGGAAGTAAGGTACTTGCAGATGCAAATGCTATTACACCAATGATAAAACAACTGATTCTTCCAGCTCCCAGGTTGCAGGAAAAGATTCTAATAGCTATAGAACGAATTTTTCAACTAGATGAAGTGAGAAATAAGTATAAAGCTTTCGCCACAATGCCTTTGGTAGAAATAACTCAAGGAAAAGATGGCCGTTTGAGAAGTCTTGCTGCCAAAGGTCTTGCTCAATTGGGTGTACTTGATAAACAGTCTTCTTATTTTTAG 3027 0.3898 MASELLVPASITPASELLSQPILTLVDTVKAANEVVIHKENFKRFSIHLDNISFLLRSLSKEDIHNPKSLENATDVLNREVGVAKHLVFECNSRNKLYLLINSRKIVTRLNCCTKDISRAVSLIPLASLDINSGLNQQISELCQKMLGADYQIAELDEEILEKIEIAIQEGNVDRSYANQLLACVADAIGVPMEHGALKREFEELKNEMENAKSRIDVAEALHMEQVIAVFGKADLITSAQEKESQYFEKRNSLGRRPLMALQSFYCPISLDIMVDPVETSSGKTFERSAIEKWIAEGKNHCPLTMLPLDTSILRPNKTLKQSIQEWKDRNTIITISTIKSELETNEDEGVLQSLDKLQDLFLEREVHREWFKMENYIAVLIGLLASKNREIRKRVLLILSLFAIDNAENKEDIAKVDNALGSIVRSLARQIEESKLALELLLELSKCKMVCNLIGNIQGSILLLVTMLKSDDVEATKNAHELLENLSFLDQNVIEMAKANYLKPLLLKLSTGPENMKIVMTKTLSEITLTDQNKLFLVKDGALQPLLQLLLNNDVEMKKVAVKALLQLSSLPENGLQMIKEGVAQPLFELLYYHSLQTPTLLEHVVATIMHLAISTTHQQAEADQVSLLDSEEDIFKFFSLISLTEPDIQNKILKAFQSLCQSFSGFRIRKRLRQISAAKVLVHYLELNTQTLRVNALKLFYCLTEDSDYDNISSHITERFIKVLLTIIEVSDDAEEMVTAMGIISKLPQESYMTQWLLDSGALKIILTCLTDQHKHALHKKQVIENSVQALCRFTVSTNLEWQKRVAEEGIIPVLVQLLSSGTPFSKQNAAISIKQFSENSYGLSKPIKKKPSIFKCCLITQETGCPAHLGTCTVESSFCIVQANALEPLVRMLAEQDVGTCEASLDALLTLLDNEAPQSGSKVLADANAITPMIKQLILPAPRLQEKILIAIERIFQLDEVRNKYKAFATMPLVEITQGKDGRLRSLAAKGLAQLGVLDKQSSYF* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0638 1008 CDD RING-Ubox_PUB 265 306 IPR045210 -
Apr1g0638 1008 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 337 IPR013083 -
Apr1g0638 1008 Pfam MCAfunc domain 29 160 IPR045766 -
Apr1g0638 1008 Pfam Armadillo/beta-catenin-like repeat 532 570 IPR000225 GO:0005515
Apr1g0638 1008 Gene3D - 338 635 IPR011989 -
Apr1g0638 1008 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 542 584 IPR000225 GO:0005515
Apr1g0638 1008 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Apr1g0638 1008 SMART arm_5 490 530 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 920 960 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 876 916 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 572 615 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 531 571 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 752 798 IPR000225 GO:0005515
Apr1g0638 1008 SMART arm_5 801 841 IPR000225 GO:0005515
Apr1g0638 1008 Gene3D - 636 856 IPR011989 -
Apr1g0638 1008 SUPERFAMILY ARM repeat 336 624 IPR016024 -
Apr1g0638 1008 Coils Coil 195 222 - -
Apr1g0638 1008 Gene3D - 866 1006 IPR011989 -
Apr1g0638 1008 SUPERFAMILY ARM repeat 642 961 IPR016024 -
Apr1g0638 1008 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 44-LIKE 9 1008 - -
Apr1g0638 1008 SUPERFAMILY RING/U-box 260 333 - -
Apr1g0638 1008 Pfam U-box domain 265 331 IPR003613 GO:0004842|GO:0016567
Apr1g0638 1008 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 9 1008 - -
Apr1g0638 1008 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0638 Apr-Chr1 7677502 7683292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0638 263 1008 U-box Gene Family AT1G76390 27.513 5.32e-59 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0638 - - gmx:100818273 1567.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0638 1 7677502 7683292 Apr1g0638 1 7677502 7683292 ECH