Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0625 ATGAAAGTACCAGCAGAGTCGCAGAAAACCCTAGGAAGCAGTCTGGGAAGAGAGGGAAAGATGCAGATCTTCGTGAAAACACTAACCGGGAAGACCATCACCCTTGAGGTGGAGTCAAGTGACACCATCGATAATGTTAAAACGAAGATTCAAGACAAAGAAGGGATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGGAAACAGCTGGAAGATGGCCGCACCCTTGCCGATTACAACATTCAGAAAGAGTCAACATTGCATCTTGTTTTGAGGCTTCGTGGTGGCATTATTGAGCCATCTTTGATGGCATTGGCCAGGAAATATAACCAGGATAAGATGATCTGCCGCAAGTGTTATGCACGCTTACACCCCCGTGCTGTGAACTGCAGGAAAAAGAAGTGTGGACACAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTAA 447 0.4743 MKVPAESQKTLGSSLGREGKMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSNQLRPKKKIK* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0625 148 Pfam Ubiquitin family 23 94 IPR000626 GO:0005515
Apr1g0625 148 Pfam Ribosomal L40e family 98 147 IPR001975 GO:0003735|GO:0005840|GO:0006412
Apr1g0625 148 PRINTS Ubiquitin signature 31 51 IPR019956 -
Apr1g0625 148 PRINTS Ubiquitin signature 52 72 IPR019956 -
Apr1g0625 148 PRINTS Ubiquitin signature 73 94 IPR019956 -
Apr1g0625 148 SMART ubq_7 21 92 IPR000626 GO:0005515
Apr1g0625 148 PANTHER UBIQUITIN 21 145 - -
Apr1g0625 148 CDD Ubl_ubiquitin 21 96 - -
Apr1g0625 148 SUPERFAMILY Ubiquitin-like 18 96 IPR029071 -
Apr1g0625 148 Gene3D - 13 99 - -
Apr1g0625 148 ProSitePatterns Ubiquitin domain signature. 47 72 IPR019954 -
Apr1g0625 148 Gene3D - 100 148 IPR038587 -
Apr1g0625 148 PANTHER UBIQUITIN-60S RIBOSOMAL PROTEIN L40 21 145 - -
Apr1g0625 148 SUPERFAMILY Zn-binding ribosomal proteins 96 147 IPR011332 GO:0006412
Apr1g0625 148 SMART Ribosomal_L40e_3 97 148 IPR001975 GO:0003735|GO:0005840|GO:0006412
Apr1g0625 148 ProSiteProfiles Ubiquitin domain profile. 21 96 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0625 Apr-Chr1 7545256 7554237 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0625 21 148 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.438 3.59e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0625 K02927 - pavi:110749633 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr1g0625 1 7545256 7554237 Apr1g0625 1 7545256 7554237 ECH