Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr1g0623 ATGATGGAAGGTGATGAGAATATTCAAGCATCAAAAGGAAAAAATGTTGAAAGCTTCACCTGCTTAGAGCCCCCCCAAAATCCAAGGAAGAAAAACAAGAAGATAGAAAACAAGAGAAGGTTCAGTGATGAACAGATTAGATCACTAGAATGCATATTTGAGTCAGAGTCAAAGCTTGAGCCAAGGAAGAAGATGCAACTCGCAAGAGATCTTGGCTTGCAGCCACGCCAAGTTGCCATATGGTTCCAAAACAGAAGAGCAAGGTGGAAATCAAAACGCATAGAGCAAGAATACAGAAAACTCAAAGATGAATATGACAACTTAGCATCTCGGTTTGAGTCACTAAAGGAAGAGAAAGAGTCTTTGCAACAAGAGTTGCATAAGCTAAGTGATTTGATGGAAATATCTCGTGATGGTAGAAGGGATGACAAAGTTGCCAAGGAAAACAGCATAGAAGATGGTGGTTCAGGAAGTGGATACAGCAGTTGGAGGCCTGAAGAAGCAAAGCCATGTTTTTCAAATGATAAAAATGAAAATAGAATCATAAGGGCCGAGAAATCTGAGGACAAGGGACACCAACTTCTAAGAATGGATGATCATGCAGAGATGCCATTGGCATCACTTGAAAAATGGTACAGTAGTGTGGACCCAAGTGGCATCTTGGACCAGTCATGTAGCAGTTCTCAATGGCTAGATTTCTGGACTTGA 708 0.411 MMEGDENIQASKGKNVESFTCLEPPQNPRKKNKKIENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASRFESLKEEKESLQQELHKLSDLMEISRDGRRDDKVAKENSIEDGGSGSGYSSWRPEEAKPCFSNDKNENRIIRAEKSEDKGHQLLRMDDHAEMPLASLEKWYSSVDPSGILDQSCSSSQWLDFWT* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr1g0623 235 CDD homeodomain 38 93 IPR001356 GO:0003677
Apr1g0623 235 MobiDBLite consensus disorder prediction 139 179 - -
Apr1g0623 235 SUPERFAMILY Homeodomain-like 23 92 IPR009057 -
Apr1g0623 235 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Apr1g0623 235 Pfam Homeobox associated leucine zipper 92 133 IPR003106 GO:0006355|GO:0043565
Apr1g0623 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 2 235 IPR045224 GO:0003700
Apr1g0623 235 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 2 235 - -
Apr1g0623 235 Gene3D - 34 97 - -
Apr1g0623 235 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Apr1g0623 235 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Apr1g0623 235 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Apr1g0623 235 Coils Coil 84 132 - -
Apr1g0623 235 SMART HOX_1 35 96 IPR001356 GO:0003677
Apr1g0623 235 MobiDBLite consensus disorder prediction 1 39 - -
Apr1g0623 235 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr1g0623 Apr-Chr1 7536901 7538488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr1g0623 29 235 Homeobox Transcription Factor Family AT2G46680 40.773 2.93e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr1g0623 Homeodomain 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr1g0623 K09338 - gmx:100499926 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g1185 10 24168963 24170402 Apr1g0623 1 7536901 7538488 ECH
Apr4g0951 4 7717267 7718316 Apr1g0623 1 7536901 7538488 ECH
Apr1g0623 1 7536901 7538488 Apr1g0623 1 7536901 7538488 ECH